weberlab-hhu / Helixer
Using Deep Learning to predict gene annotations
☆186Updated last week
Alternatives and similar repositories for Helixer:
Users that are interested in Helixer are comparing it to the libraries listed below
- Fast and accurately polish the genome generated by long reads.☆221Updated 3 months ago
- Tool to plot synteny and structural rearrangements between genomes☆302Updated last week
- ☆204Updated 2 months ago
- 3D de novo assembly (3D DNA) pipeline☆208Updated last year
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆129Updated 2 weeks ago
- A bioinformatics tool for working with modified bases☆185Updated last week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆210Updated last week
- Any Way to Show Multi genomic Synteny☆178Updated last week
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆137Updated 3 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆114Updated 3 weeks ago
- Whole Genome Alignment Tools☆172Updated 3 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆200Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆248Updated last month
- ☆185Updated 3 weeks ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆165Updated this week
- Genome browser and variant annotation☆300Updated last week
- Synteny and Rearrangement Identifier☆376Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline☆346Updated last month
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆253Updated 3 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆274Updated this week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆160Updated last year
- Processing pipeline for pan-genome visulization and exploration☆138Updated last year
- ☆90Updated 3 months ago
- the pangenome graph builder☆425Updated this week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆226Updated 4 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆266Updated 2 months ago
- Genome Assembly and Annotation Service code☆211Updated last year
- A genome completeness evaluation tool based on miniprot☆204Updated last month
- De-Novo Repeat Discovery Tool☆208Updated 3 months ago
- Pairwise whole genome aligner☆151Updated last week