weberlab-hhu / HelixerLinks
Using Deep Learning to predict gene annotations
☆198Updated 2 weeks ago
Alternatives and similar repositories for Helixer
Users that are interested in Helixer are comparing it to the libraries listed below
Sorting:
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆141Updated 3 weeks ago
- Fast and accurately polish the genome generated by long reads.☆226Updated 5 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆171Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆308Updated 2 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated 2 months ago
- ☆211Updated 5 months ago
- A bioinformatics tool for working with modified bases☆198Updated last week
- Any Way to Show Multi genomic Synteny☆194Updated 2 months ago
- 3D de novo assembly (3D DNA) pipeline☆212Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆262Updated last month
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- Synteny and Rearrangement Identifier☆390Updated last month
- Genome browser and variant annotation☆310Updated last week
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆211Updated last week
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆258Updated 6 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆139Updated 3 years ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆284Updated last month
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆169Updated last year
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆152Updated 2 years ago
- Read trimming tool for Illumina NGS data.☆138Updated 10 years ago
- a tool for inferring species tree from sequencing reads☆150Updated 4 months ago
- Pairwise whole genome aligner☆169Updated 2 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆203Updated last year
- Genome Assembly and Annotation Service code☆212Updated last year
- ☆198Updated 2 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆149Updated 3 weeks ago
- Whole Genome Alignment Tools☆199Updated 3 weeks ago
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆160Updated last month
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆227Updated last week
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆115Updated 3 months ago