Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
☆143Jul 23, 2025Updated last year
Alternatives and similar repositories for LongRead_tutorials
Users that are interested in LongRead_tutorials are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quality control for MinION sequencing data☆220Mar 17, 2026Updated 7 months ago
- An overview of all nanopack tools☆293Jun 2, 2023Updated 3 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆113Oct 25, 2021Updated 4 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆188Mar 25, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Plotting scripts for long read sequencing data☆562Oct 1, 2026Updated 2 weeks ago
- Research release basecalling models and configurations☆122Sep 7, 2026Updated last month
- ☆35Feb 20, 2020Updated 6 years ago
- Structural variant caller for low-depth long-read sequencing data☆50Feb 5, 2026Updated 8 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆120Aug 26, 2026Updated last month
- A curated list of awesome nanopore analysis tools.☆334May 20, 2026Updated 4 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Aug 30, 2022Updated 4 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆577Oct 1, 2026Updated 2 weeks ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆11Mar 2, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆262Oct 1, 2026Updated 2 weeks ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆530May 20, 2026Updated 4 months ago
- Oxford Nanopore's Basecaller☆881Sep 3, 2026Updated last month
- Nanopore data analysis in R☆41Jul 24, 2023Updated 3 years ago
- Add multiple thread function for genome comparison☆17Sep 29, 2021Updated 5 years ago
- quality filtering tool for long reads☆419Sep 17, 2025Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,260May 19, 2026Updated 4 months ago
- Plotting tools for nanopore methylation data☆96Sep 11, 2026Updated last month
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆245Dec 29, 2023Updated 2 years ago
- Comparison of multiple long read datasets☆182Aug 3, 2026Updated 2 months ago
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- Structural variation caller using third generation sequencing☆684Sep 10, 2026Updated last month
- ☆78Jun 12, 2020Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆41Mar 25, 2025Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- Variant calling tool for long-read sequencing data☆119Mar 19, 2025Updated last year
- ARTIC SARS-CoV-2 workflow and reporting☆51Apr 25, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆17Oct 9, 2026Updated last week
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 4 years ago
- Nanopore data assembler☆171Mar 27, 2022Updated 4 years ago
- Pore-C support☆54Feb 22, 2023Updated 3 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆260Oct 2, 2026Updated 2 weeks ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆190Oct 1, 2026Updated 2 weeks ago
- Quality control tools for nanopore sequencing data☆116Oct 26, 2024Updated last year