Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
☆144Jul 23, 2025Updated last year
Alternatives and similar repositories for LongRead_tutorials
Users that are interested in LongRead_tutorials are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quality control for MinION sequencing data☆221Mar 17, 2026Updated 5 months ago
- An overview of all nanopack tools☆292Jun 2, 2023Updated 3 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆288Oct 18, 2024Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Oct 25, 2021Updated 4 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆185Mar 25, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Research release basecalling models and configurations☆120May 20, 2026Updated 2 months ago
- Plotting scripts for long read sequencing data☆558Aug 3, 2026Updated 2 weeks ago
- Structural variant caller for low-depth long-read sequencing data☆49Feb 5, 2026Updated 6 months ago
- ☆35Feb 20, 2020Updated 6 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆119Jul 8, 2026Updated last month
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Aug 30, 2022Updated 3 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆575Feb 14, 2024Updated 2 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- ☆261Aug 3, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Sequence correction provided by ONT Research☆520May 20, 2026Updated 2 months ago
- Add multiple thread function for genome comparison☆17Sep 29, 2021Updated 4 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,235May 19, 2026Updated 2 months ago
- a short-read polishing tool for long-read assemblies☆224Jul 28, 2026Updated 3 weeks ago
- Plotting tools for nanopore methylation data☆95Aug 3, 2026Updated 2 weeks ago
- A curated list of awesome nanopore analysis tools.☆325May 20, 2026Updated 2 months ago
- Oxford Nanopore's Basecaller☆860Jul 30, 2026Updated 2 weeks ago
- quality filtering tool for long reads☆412Sep 17, 2025Updated 11 months ago
- Nanopore data analysis in R☆41Jul 24, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆78Jun 12, 2020Updated 6 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆242Dec 29, 2023Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated 2 years ago
- Structural variation caller using third generation sequencing☆674Jul 20, 2026Updated 3 weeks ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆52Apr 25, 2025Updated last year
- Nanopore data assembler☆170Mar 27, 2022Updated 4 years ago
- Pore-C support☆54Feb 22, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Comparison of multiple long read datasets☆179Aug 3, 2026Updated 2 weeks ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆188Aug 3, 2026Updated 2 weeks ago
- Quality control tools for nanopore sequencing data☆114Oct 26, 2024Updated last year
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28May 23, 2024Updated 2 years ago
- Basic Sequence Taxonomy Annotator☆45May 14, 2024Updated 2 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- ☆11Dec 12, 2014Updated 11 years ago