ParkerLab / bioinf545Links
ATAC-seq lab for BIOINF545
☆25Updated 4 months ago
Alternatives and similar repositories for bioinf545
Users that are interested in bioinf545 are comparing it to the libraries listed below
Sorting:
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 5 months ago
- ☆34Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- ATAC-seq Quality Control☆23Updated last month
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- ☆38Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 3 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- ☆30Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- ☆38Updated 2 years ago
- A preprocessing and QC pipeline for HiChIP data☆39Updated 2 years ago
- ☆17Updated 6 years ago