ParkerLab / bioinf545Links
ATAC-seq lab for BIOINF545
☆24Updated 8 months ago
Alternatives and similar repositories for bioinf545
Users that are interested in bioinf545 are comparing it to the libraries listed below
Sorting:
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 7 months ago
- ☆34Updated 6 years ago
- ATAC-seq Quality Control☆24Updated 5 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 9 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- Reference transcriptome indices build from kallisto for popular organisms☆44Updated last year
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆34Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- ☆58Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- ☆41Updated 3 years ago
- ☆23Updated 6 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- ☆39Updated 5 years ago
- Workshop • Analysis of RNA-seq data☆36Updated last year