ParkerLab / bioinf545Links
ATAC-seq lab for BIOINF545
☆25Updated 4 months ago
Alternatives and similar repositories for bioinf545
Users that are interested in bioinf545 are comparing it to the libraries listed below
Sorting:
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 4 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 6 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated 2 years ago
- ☆34Updated 6 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- ATAC-seq Quality Control☆24Updated 2 months ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- An R package to time somatic mutations☆62Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- ☆59Updated 10 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- ☆55Updated 4 years ago
- ☆38Updated 2 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆112Updated 2 weeks ago
- ☆38Updated 5 years ago
- Tutorial Website☆59Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- Single Cell Analysis Automated Workflow☆27Updated 2 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis☆20Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago