wyguo / ThreeDRNAseq
A pipeline for differential expression and differential alternative splicing analysis
☆61Updated 9 months ago
Alternatives and similar repositories for ThreeDRNAseq:
Users that are interested in ThreeDRNAseq are comparing it to the libraries listed below
- An R interface to the MEME Suite☆47Updated 3 months ago
- Reduce + Visualize Gene Ontology☆24Updated 2 months ago
- An interactive web-tool for RNA-seq analysis☆67Updated 3 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated last week
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- R tools for Agilent electrophoresis data☆44Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆107Updated last month
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 11 years ago
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆54Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- ☆33Updated this week
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆66Updated this week
- Moderator Templates for https://www.biostars.org/☆11Updated 3 years ago
- Visualizing transcript structure and annotation using ggplot2☆133Updated 5 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆30Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆56Updated 4 years ago
- R package for genomic feature analysis and visualization☆75Updated 4 years ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated 3 weeks ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆42Updated 2 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- ☆48Updated 3 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- Merge fastq files split over lanes☆20Updated 6 years ago
- Intro to Shell for Bioinformatics - with STG examples☆28Updated 8 years ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆40Updated last year
- ☆52Updated last week
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆58Updated this week
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 3 years ago