wyguo / ThreeDRNAseqLinks
A pipeline for differential expression and differential alternative splicing analysis
☆66Updated last year
Alternatives and similar repositories for ThreeDRNAseq
Users that are interested in ThreeDRNAseq are comparing it to the libraries listed below
Sorting:
- An R interface to the MEME Suite☆52Updated last month
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 6 months ago
- R package for genomic feature analysis and visualization☆79Updated 3 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆72Updated last month
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆44Updated last year
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated this week
- RNA editing quantification in deep transcriptome data☆15Updated 3 weeks ago
- An interactive web-tool for RNA-seq analysis☆68Updated 5 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆44Updated last month
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆86Updated 6 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Tools for analyzing DNA methylation data☆43Updated last week
- ☆50Updated 4 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆27Updated last month
- REDItools are python scripts to investigate RNA editing at genomic scale.☆67Updated 3 weeks ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- R package containing useful functions for mutational signature analysis☆83Updated this week
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago