A pipeline for differential expression and differential alternative splicing analysis
☆67Apr 26, 2024Updated last year
Alternatives and similar repositories for ThreeDRNAseq
Users that are interested in ThreeDRNAseq are comparing it to the libraries listed below
Sorting:
- Differential Count Data Analysis Toolbox☆61Feb 5, 2024Updated 2 years ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆22Sep 1, 2021Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Jul 1, 2024Updated last year
- Create QC and summary reports for Alevin output☆31Jan 27, 2026Updated last month
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated last year
- Survival Analysis for Protein-Level TCGA Analysis☆11Nov 30, 2018Updated 7 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Jan 30, 2026Updated last month
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆15Jan 14, 2018Updated 8 years ago
- miRTrace☆11Jun 14, 2023Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 5 months ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.☆14Jul 23, 2020Updated 5 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Mar 13, 2022Updated 4 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Sep 13, 2024Updated last year
- A hacky little interface to call the Enrichr functional enrichment tool from R.☆13Dec 13, 2018Updated 7 years ago
- DEAPP shiny App☆30Jun 8, 2022Updated 3 years ago
- iread☆25Jul 16, 2021Updated 4 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Feb 7, 2024Updated 2 years ago
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 4 years ago
- ☆17Mar 17, 2022Updated 4 years ago
- Parse command-line arguments and simple variable interpolation☆17Feb 6, 2026Updated last month
- Cancer circRNA identification pipeline with an ensemble approach☆18Dec 4, 2024Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Oct 9, 2019Updated 6 years ago
- Assembles a graph manifold from time series single-cell RNAseq data☆18May 11, 2021Updated 4 years ago
- Analyzing RNA-Seq with approximate likelihood☆26Dec 13, 2020Updated 5 years ago
- ☆29Sep 23, 2019Updated 6 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- iDEP: integrated Differential Expression & Pathway analysis☆14Mar 1, 2019Updated 7 years ago
- A Pedantic FASTA Parser and Tool Set☆14Apr 22, 2020Updated 5 years ago
- ☆21Dec 26, 2025Updated 2 months ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆136Jan 28, 2026Updated last month
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Mar 7, 2020Updated 6 years ago
- RNA-Seq analysis workflow☆105Jul 14, 2021Updated 4 years ago
- An interactive web-tool for RNA-seq analysis☆70Feb 12, 2026Updated last month