inutano / chip-atlas
ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser
☆73Updated this week
Alternatives and similar repositories for chip-atlas
Users that are interested in chip-atlas are comparing it to the libraries listed below
Sorting:
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- An R interface to the MEME Suite☆50Updated 7 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 5 years ago
- Explore and download data from the recount3 project☆34Updated 5 months ago
- Tools for working with BUS files☆98Updated 2 weeks ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 5 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 3 months ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 4 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆35Updated 10 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆69Updated 4 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆80Updated 5 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 8 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆74Updated 9 months ago
- ☆116Updated last year
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated last week
- R package containing useful functions for mutational signature analysis☆81Updated this week
- ☆34Updated 5 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 2 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆60Updated 2 weeks ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- IDR☆31Updated 2 years ago
- A tool for bigWig files.☆119Updated 6 years ago