ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser
☆83Jun 20, 2026Updated 2 weeks ago
Alternatives and similar repositories for chip-atlas
Users that are interested in chip-atlas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 14 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Jul 1, 2020Updated 6 years ago
- Common Workflow Language definition files for workflows introduced in DAT2☆11May 23, 2022Updated 4 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Oct 15, 2025Updated 8 months ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆39Aug 16, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Jul 7, 2016Updated 10 years ago
- Web app for automated, systematic, and integrated RNA-seq differential expression analysis☆15May 1, 2026Updated 2 months ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiation☆10Apr 20, 2017Updated 9 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆44Mar 3, 2017Updated 9 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 5 years ago
- inference of transcription factor activity at the single cell level☆28Jul 2, 2026Updated last week
- About Workflow related meetup☆14Dec 4, 2024Updated last year
- Particle dynamics and simulated annealing for chromosome structure calculation☆18Jan 17, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tools to process and analyze deep sequencing data.☆762Jun 24, 2026Updated 2 weeks ago
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 4 years ago
- wgs_pipeline☆18Dec 3, 2013Updated 12 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- R package to quickly obtain count vectors from indexed bam files☆15May 21, 2026Updated last month
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 11 months ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆86Aug 25, 2020Updated 5 years ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Jul 10, 2015Updated 10 years ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Human transcription factor target genes from 6 databases in convenient R format.☆87Oct 4, 2018Updated 7 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated 2 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Jun 4, 2023Updated 3 years ago
- Virtual Pharmacist is a web tool that interprets personal genome for the impact of genetic variation on drug response. It can take varian…☆13Nov 16, 2015Updated 10 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆312Mar 6, 2023Updated 3 years ago
- Devel repository for bsseq☆38Feb 6, 2026Updated 5 months ago
- An open-source R package for omics data integrative analysis in terms of network, evolution and ontology☆18Jan 4, 2024Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- Code for building and testing variant ranking strategies☆18Apr 13, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago
- ☆85Dec 11, 2023Updated 2 years ago
- ☆11Aug 3, 2023Updated 2 years ago
- Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources☆30Nov 14, 2018Updated 7 years ago
- file command's magic pattern file for bioinformatics☆21Nov 25, 2015Updated 10 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆273May 5, 2023Updated 3 years ago
- Signed LD profile regression code☆19Aug 1, 2025Updated 11 months ago