Alternatives and similar repositories for SC3-paper-figures

Users that are interested in SC3-paper-figures are comparing it to the libraries listed below

• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆42Updated 4 years ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆79Updated 3 years ago
• WRui / Post_Implantation
  ☆27Updated 4 years ago
• caleblareau / singlecell_bloodtraits
  Data/analysis repository for "Interrogation of human hematopoiesis..." paper
  ☆20Updated 6 years ago
• riazn / bms038_analysis
  Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…
  ☆51Updated 7 years ago
• songw01 / MEGENA
  Multiscale embedded gene co-expression network analysis
  ☆54Updated last year
• morrislab / qapa
  RNA-seq Quantification of Alternative Polyadenylation
  ☆47Updated last month
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆33Updated 3 years ago
• adamh-broad / single_cell_intestine
  R code for single-cell analysis of intestinal epithelial cells
  ☆22Updated 7 years ago
• yanailab / CEL-Seq-pipeline
  ☆33Updated 7 years ago
• BaderLab / singleLiverCells
  Scripts for processing single liver cells RNA-Seq 10X Genomics Data
  ☆25Updated 6 years ago
• YeoLab / singlecell_pnm
  Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…
  ☆20Updated 8 years ago
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆36Updated 7 years ago
• cole-trapnell-lab / monocle2-rge-paper
  Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)
  ☆29Updated 5 years ago
• ding-lab / PanCanAtlasGermline
  ☆44Updated 6 years ago
• wzthu / esATAC
  Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
  ☆23Updated 3 years ago
• dbrg77 / plate_scATAC-seq
  A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
  ☆43Updated 4 years ago
• broadinstitute / 2019_scWorkshop
  Repo for Physalia course Analysis of Single Cell RNA-Seq data
  ☆32Updated 5 years ago
• nghiavtr / SCmut
  ☆33Updated 6 years ago
• JunyueC / sci-RNA-seq3_pipeline
  Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)
  ☆43Updated 4 years ago
• wbaopaul / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆76Updated 5 months ago
• ElkonLab / scAPA
  This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.
  ☆22Updated 3 years ago
• icbi-lab / Immunophenogram
  ☆41Updated 7 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆30Updated 7 years ago
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆51Updated last year
• ENCODE-DCC / dna-me-pipeline
  DCC/DAC methylation pipeline source
  ☆56Updated 5 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆54Updated 4 years ago
• srp33 / TCGA_RNASeq_Clinical
  ☆61Updated 5 years ago
• WubingZhang / MAGeCKFlute
  Integrative analysis pipeline for pooled CRISPR functional genetic screens
  ☆30Updated last year
• McGranahanLab / TcellExTRECT
  ☆47Updated 7 months ago