ding-lab / GenomeVIP
☆20Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for GenomeVIP
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆31Updated 8 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Genomic Association Tester☆29Updated last year
- Personal diploid genome creation and coordinate conversion☆21Updated last month
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆39Updated 3 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆22Updated 3 years ago
- Q ChIP-seq peak caller☆18Updated 4 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 4 years ago
- A Framework to call Structural Variants from NGS based datasets☆21Updated 6 years ago
- Simple web browser to visualize HiC tracks☆18Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆29Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆34Updated last year
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- ☆24Updated 5 months ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- a set of NGS pipelines☆24Updated 2 weeks ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆9Updated 8 years ago