Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.
☆31Nov 27, 2017Updated 8 years ago
Alternatives and similar repositories for examples-R
Users that are interested in examples-R are comparing it to the libraries listed below
Sorting:
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.☆54Jul 20, 2019Updated 6 years ago
- ISB CGC Webapp☆12Dec 3, 2025Updated 3 months ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 10 years ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Oct 28, 2022Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32May 31, 2016Updated 9 years ago
- Examples of kallisto + sleuth☆11May 18, 2017Updated 8 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 7 months ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 9 years ago
- wgs_pipeline☆18Dec 3, 2013Updated 12 years ago
- Virtual Pharmacist is a web tool that interprets personal genome for the impact of genetic variation on drug response. It can take varian…☆13Nov 16, 2015Updated 10 years ago
- ☆62Aug 4, 2020Updated 5 years ago
- synchronize your wordpress or github to hugo website automaticlly☆15Nov 2, 2021Updated 4 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Jun 25, 2019Updated 6 years ago
- Gene expression viewer template☆11Aug 30, 2017Updated 8 years ago
- Documentation for the ISB-CGC on Read the Docs.☆11Jan 20, 2026Updated 2 months ago
- Annotation and Prediction of Oncogenic Gene Fusions in RNAseq☆12Feb 20, 2016Updated 10 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 3 years ago
- A list of resources for metadata tools, standards and/or development☆11Jun 20, 2018Updated 7 years ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆23Dec 6, 2018Updated 7 years ago
- Materials accompanying the upstrap paper☆12Oct 19, 2020Updated 5 years ago
- Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R☆36Jan 28, 2022Updated 4 years ago
- Code for the Recount project☆11Dec 13, 2024Updated last year
- 软件方面的包 (包括各种芯片数据处理,NGS数据处理,差异分析等等!)☆14Apr 23, 2016Updated 9 years ago
- 天津医科大学,本科选修课,《故事中的统计学》课程资料☆33Nov 3, 2025Updated 4 months ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3…☆15Dec 7, 2018Updated 7 years ago
- SAS codes to produce Table, Listing, and Figure in a clinical trial setting.☆12Jan 4, 2017Updated 9 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 3 years ago
- ☆19Mar 6, 2019Updated 7 years ago
- ☆19Jul 6, 2023Updated 2 years ago
- Browser for ExAC consortium data☆106Jan 21, 2022Updated 4 years ago
- Git使用手册☆17Mar 10, 2019Updated 7 years ago
- EpiGenome Gateway - WashU EpiGenome Browser☆21Oct 11, 2021Updated 4 years ago
- Genetics training camp☆21Sep 8, 2020Updated 5 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Oct 5, 2019Updated 6 years ago
- ☆59Apr 28, 2020Updated 5 years ago
- [DEPRECATED] An R package for Google Genomics API queries.☆45Mar 15, 2023Updated 3 years ago