isb-cgc / examples-R
Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.
☆31Updated 7 years ago
Alternatives and similar repositories for examples-R:
Users that are interested in examples-R are comparing it to the libraries listed below
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 4 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 3 months ago
- DESeq2 or edgeR☆22Updated 8 years ago
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- Course material for introductory R / Bioconductor courses☆44Updated last year
- Functional enrichment analysis of high-throughput omics data☆20Updated 2 months ago
- An R client for broads firehose pipeline, providing TCGA data sets☆60Updated 5 years ago
- R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.☆25Updated 3 months ago
- Summer school course materials collection☆25Updated 6 years ago
- Glimma R package☆50Updated 6 months ago
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆24Updated 4 years ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Updated 2 years ago
- Bioconductor package for management of multi-assay data☆71Updated last month
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆18Updated 5 years ago
- ATAC_seq Workshop☆14Updated 7 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- ☆34Updated 8 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- Devel repository for minfi☆60Updated 10 months ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆44Updated 3 months ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆33Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- The START App: R Shiny Transcriptome Analysis Resource Tool☆90Updated 4 years ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆36Updated last year
- Analysis for svaseq paper☆19Updated 10 years ago
- R package to visualize scRNA sequencing data.☆20Updated 3 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Representation and manipulation of genomic intervals☆44Updated 3 months ago