kundajelab / training_campLinks
Genetics training camp
☆21Updated 4 years ago
Alternatives and similar repositories for training_camp
Users that are interested in training_camp are comparing it to the libraries listed below
Sorting:
- Universal RObust Peak Annotator☆16Updated last year
- BigWig manpulation tools using libBigWig and htslib☆29Updated 11 months ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆20Updated 4 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Exon-exon splice junctions across SRA☆41Updated 3 years ago
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Updated 4 years ago
- TSIS: an R package to infer time-series isoform switch of alternative splicing☆3Updated 2 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 7 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- ☆20Updated 8 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- ☆35Updated 9 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago