Alternatives and similar repositories for workflow-profiler

Users that are interested in workflow-profiler are comparing it to the libraries listed below

• wueric / SplicePlot
  Easily draw publication-quality figures of splicing quantitative trait loci
  ☆16Updated 7 years ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆48Updated 5 years ago
• sequencing / isaac_variant_caller
  This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka
  ☆37Updated 8 years ago
• broadinstitute / gatk-protected
  Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead
  ☆32Updated 8 years ago
• nmdp-bioinformatics / ngs
  Next generation sequencing (NGS/HTS) tools.
  ☆19Updated last year
• wurmlab / oswitch
  Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
  ☆76Updated 8 years ago
• ncbi / ngs
  NGS Language Bindings
  ☆119Updated last year
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• IntelLabs / GKL
  Accelerated kernel library for genomics
  ☆108Updated 3 months ago
• dnanexus / dx-toolkit
  DNAnexus platform client libraries
  ☆100Updated 3 weeks ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆60Updated 7 years ago
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆110Updated 2 years ago
• MauricioCarneiro / PairHMM
  Optimization of a Haplotype PairHMM class for GPU processing
  ☆24Updated 8 years ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• genome-in-a-bottle / giab_tools_methods
  This repository contains a list of tools or methods that have been used in GIAB analysis
  ☆30Updated 5 years ago
• pcingola / SnpSift
  ☆38Updated 8 months ago
• bcbio / bcbio-nextgen-vm
  Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
  ☆67Updated 5 years ago
• BioContainers / specs
  BioContainers specifications
  ☆52Updated 2 years ago
• arq5x / piledriver
  Basic, no assumptions, multi-pileup
  ☆24Updated 11 years ago
• Intel-HLS / BIGstack
  ☆12Updated last year
• ytchen0323 / cloud-scale-bwamem
  ☆15Updated 8 years ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆90Updated last year
• cancerit / CaVEMan
  SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…
  ☆63Updated 6 months ago
• wanpinglee / MOSAIK
  reference-guided aligner for next-generation sequencing technologies
  ☆56Updated 9 years ago
• BauerLab / ngsane
  Analysis Framework for Biological Data from High Throughput Experiments
  ☆34Updated 9 years ago
• gatk-workflows / five-dollar-genome-analysis-pipeline
  Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
  ☆57Updated 5 years ago
• opencb / biodata
  Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…
  ☆31Updated this week
• CGATOxford / cgat
  Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps
  ☆124Updated 6 years ago
• liyao001 / BioQueue
  A novel pipeline framework to accelerate bioinformatics analysis
  ☆30Updated 3 weeks ago