TRON-Bioinformatics / TCLPLinks
an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression
☆10Updated last year
Alternatives and similar repositories for TCLP
Users that are interested in TCLP are comparing it to the libraries listed below
Sorting:
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated this week
- ☆11Updated 5 years ago
- PRedictor of IMmunogenic Epitopes☆20Updated 3 weeks ago
- HLA-II ligand predictor.☆43Updated 2 years ago
- A database of T-cell receptor sequences☆9Updated 4 years ago
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆27Updated 7 years ago
- ☆48Updated 2 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆18Updated 2 months ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆20Updated 2 years ago
- ☆38Updated last year
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 4 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- HLA-I ligand predictor☆39Updated 5 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆32Updated 3 years ago
- The tRNA adaptation index☆18Updated last month
- COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …☆17Updated 2 years ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆2Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- predicting peptide and TCR interaction☆20Updated 4 years ago
- DRUGZ software☆23Updated 3 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆34Updated 3 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆13Updated 5 years ago
- A guide to running MaxQuant in Linux☆33Updated 5 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆25Updated 3 years ago
- Associated code for EvoWeaver publication☆13Updated 2 weeks ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆32Updated last month