an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression
☆12Feb 26, 2024Updated 2 years ago
Alternatives and similar repositories for TCLP
Users that are interested in TCLP are comparing it to the libraries listed below
Sorting:
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆17Apr 22, 2024Updated last year
- 📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.☆23Apr 23, 2024Updated last year
- ☆22Oct 4, 2022Updated 3 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Jan 27, 2026Updated last month
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated 11 months ago
- Predicting biosynthetic gene clusters in genomes☆42Nov 26, 2013Updated 12 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Apr 1, 2022Updated 3 years ago
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- This is the repository of code and data for paper "Machine learning-enabled chemical space exploration of all-inorganic perovskites for p…☆10Sep 23, 2024Updated last year
- Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.☆42Dec 26, 2024Updated last year
- A Python package for amino acid sequence analysis. Proforma 2.1 complicant.☆14Feb 6, 2026Updated 3 weeks ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆89Jun 14, 2022Updated 3 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆38Nov 14, 2021Updated 4 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆88Apr 12, 2024Updated last year
- nanobody melting temperature prediction using protein embeddings☆11Feb 24, 2025Updated last year
- Performs BLAST on compressed proteomic data.☆17Jun 15, 2015Updated 10 years ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆170Dec 24, 2023Updated 2 years ago
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆13Jul 9, 2025Updated 7 months ago
- Docker container for Illumina bcl2fastq☆11Aug 7, 2024Updated last year
- alphafold FAPE loss☆10Sep 28, 2021Updated 4 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- ☆21Jul 8, 2025Updated 7 months ago
- ☆11May 11, 2023Updated 2 years ago
- Antigen-receptor Design Against Peptide-MHC Targets☆20Jan 9, 2026Updated last month
- Tokenizing Loops of Antibodies☆24Nov 23, 2025Updated 3 months ago
- ☆10May 25, 2025Updated 9 months ago
- Drug Response Estimation from single-cell Expression Profiles☆12Jan 5, 2024Updated 2 years ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆18Nov 18, 2025Updated 3 months ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated 11 months ago
- LightMHC: A Light Model for pMHC Structure Prediction with Graph Neural Networks☆12Jan 9, 2024Updated 2 years ago
- Therapeutic Nanobody Profiler☆17Nov 11, 2025Updated 3 months ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 12 years ago
- HLA-I ligand predictor☆43Sep 24, 2025Updated 5 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- The code for UniPMT☆18Mar 16, 2025Updated 11 months ago
- Frankies Scalable, AI-Based Antibody Design Pipeline☆18Feb 20, 2026Updated last week
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago