phdymz / ProteinMAELinks
Official PyTorch implementation of "ProteinMAE: Masked Autoencoder for Protein Surface Self-supervised Learning".
☆15Updated last year
Alternatives and similar repositories for ProteinMAE
Users that are interested in ProteinMAE are comparing it to the libraries listed below
Sorting:
- ☆61Updated last year
- Code for humanization of antibody and nanobody☆58Updated last month
- ☆72Updated 5 years ago
- ☆49Updated last month
- Pretrainable geometric graph neural network for antibody affinity maturation☆63Updated 7 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆45Updated 10 months ago
- ☆52Updated last year
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆68Updated 3 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.☆40Updated 9 months ago
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆41Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆82Updated 2 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- ☆39Updated last year
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆52Updated 11 months ago
- Repo of AntiBMPNN project for antibody sequence design.☆17Updated 4 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- ☆86Updated 3 years ago
- Efficient implementatin of ESM family.☆74Updated last month
- Evaluating Protein Binding Interfaces with Transformer Networks☆47Updated last year
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆27Updated 2 years ago
- ☆80Updated 4 months ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆76Updated 5 months ago
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆30Updated 3 months ago
- A command-line interface and Python library for generating AlphaFold3 input files.☆37Updated 4 months ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆55Updated 10 months ago
- A python package and collection of scripts for computing protein surface meshes, chemical, electrostatic, geometric features, and buildin…☆26Updated 3 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆55Updated 4 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- ☆45Updated last year