Official PyTorch implementation of "ProteinMAE: Masked Autoencoder for Protein Surface Self-supervised Learning".
☆19May 7, 2024Updated 2 years ago
Alternatives and similar repositories for ProteinMAE
Users that are interested in ProteinMAE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Jun 14, 2025Updated last year
- Multimodal Pretraining for Unsupervised Protein Representation Learning☆22Jul 30, 2024Updated 2 years ago
- ☆22Mar 30, 2024Updated 2 years ago
- Features Based Conformational Clustering of MD trajectories. See details at:☆11Aug 1, 2026Updated 3 months ago
- ☆257May 22, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Nov 22, 2024Updated last year
- ☆19Jun 11, 2026Updated 4 months ago
- Official Implementation of CompassDock☆21Feb 13, 2026Updated 8 months ago
- pip install ipsae☆12Sep 15, 2025Updated last year
- ☆32Mar 21, 2025Updated last year
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆56Jun 22, 2026Updated 4 months ago
- ☆14May 18, 2025Updated last year
- ☆13Jul 11, 2026Updated 3 months ago
- Cyclic peptide binder design using a fragment docking and assembling strategy☆12May 20, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Masif seed paper repository☆174Sep 22, 2025Updated last year
- Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model☆27Nov 18, 2024Updated last year
- ☆27May 16, 2026Updated 5 months ago
- Inpainting protein sequence and structure☆13Nov 10, 2023Updated 2 years ago
- ☆41Mar 7, 2026Updated 7 months ago
- ☆14Mar 15, 2025Updated last year
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆24Mar 19, 2025Updated last year
- Scoring methods for predicting the DDG upon protein mutation☆18Feb 20, 2023Updated 3 years ago
- AF2chi implementation code for localColabFold☆10Oct 8, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆16Jun 11, 2021Updated 5 years ago
- Code described in Harvey et al. 2026 (DOI: https://doi.org/10.1038/s41467-026-72093-5).☆11Oct 14, 2026Updated 2 weeks ago
- ☆17Jun 3, 2025Updated last year
- ☆37Mar 19, 2025Updated last year
- TPepPro: a deep learning model for predicting peptide-protein interactions☆15Jun 25, 2024Updated 2 years ago
- Modelling protein conformations with Alphafold3☆17Updated this week
- TFold v1.0☆37Jul 16, 2024Updated 2 years ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆90Oct 2, 2026Updated last month
- ☆15Nov 18, 2025Updated 11 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- [ICLR'26] Towards All-Atom Foundation Models for Biomolecular Binding Affinity Prediction☆24Jul 9, 2026Updated 3 months ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆55Dec 3, 2024Updated last year
- Pharmacon: A Molecular Dynamics Analysis Toolkit☆25Oct 5, 2026Updated 3 weeks ago
- Heuristic energy-based cyclic peptide design☆17Feb 21, 2025Updated last year
- AbBFN2: A flexible antibody foundation model based on Bayesian Flow Networks☆39Jun 4, 2025Updated last year
- ☆15Jul 28, 2025Updated last year