☆53Dec 3, 2023Updated 2 years ago
Alternatives and similar repositories for PanPep
Users that are interested in PanPep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TEIM: TCR-Epitope Interaction Modeling☆57Jul 26, 2023Updated 2 years ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆17Apr 22, 2024Updated last year
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆90Jun 14, 2022Updated 3 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆59May 4, 2022Updated 3 years ago
- ☆11May 11, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Apr 1, 2022Updated 4 years ago
- ☆15Nov 13, 2023Updated 2 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Apr 22, 2025Updated 11 months ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Jul 12, 2025Updated 9 months ago
- ☆17Jun 24, 2021Updated 4 years ago
- ☆22Oct 4, 2022Updated 3 years ago
- Predictor of TCR-epitope interactions☆34Sep 9, 2025Updated 7 months ago
- ☆48Mar 30, 2026Updated last week
- CLIP-based model for aligning epitopes to immune receptors☆12Apr 30, 2025Updated 11 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆40Apr 7, 2023Updated 3 years ago
- A unified cross-attention model for predicting antigen binding specificity to both HLA and TCR molecules☆13Jul 9, 2025Updated 9 months ago
- alphafold FAPE loss☆10Sep 28, 2021Updated 4 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆19Aug 26, 2020Updated 5 years ago
- TABR-BERT: an Accurate and Robust BERT-based Transfer Learning Model for TCR-pMHC Interaction Prediction☆12Jul 19, 2024Updated last year
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆12Jun 19, 2023Updated 2 years ago
- Code repository of "Deep generative design of RNA family sequences"☆40Updated this week
- ☆13Apr 1, 2026Updated last week
- Demos of many Rosetta applications☆24Jun 10, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Official PyTorch implementation of "ProteinMAE: Masked Autoencoder for Protein Surface Self-supervised Learning".☆17May 7, 2024Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆91Apr 12, 2024Updated 2 years ago
- TCR and BCR assembly from RNA-seq data☆346Mar 14, 2026Updated 3 weeks ago
- ☆21Nov 15, 2022Updated 3 years ago
- ☆33Mar 9, 2026Updated last month
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆172Dec 24, 2023Updated 2 years ago
- The first multimodal QA dataset specifically designed for evaluating large TCM language models.☆21Oct 24, 2025Updated 5 months ago
- This study explored prompt-based learning to adapt the state-of-the-art image segmentation foundation model SAM for cryo-EM. Through tria…☆12Apr 27, 2025Updated 11 months ago
- ☆17May 23, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆18Feb 12, 2026Updated 2 months ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆16Apr 8, 2021Updated 5 years ago
- MCGLPPI and MCGLPPI++: Integration of molecular coarse-grained model into geometric representation learning framework for protein-protein…☆25Jan 8, 2025Updated last year
- ☆22Jun 14, 2025Updated 9 months ago
- ☆10Feb 4, 2025Updated last year
- ☆48Nov 19, 2021Updated 4 years ago
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆72Feb 3, 2026Updated 2 months ago