TEIM: TCR-Epitope Interaction Modeling
☆59Jul 26, 2023Updated 2 years ago
Alternatives and similar repositories for TEIM
Users that are interested in TEIM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆54Dec 3, 2023Updated 2 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆91Jun 14, 2022Updated 4 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆36Mar 29, 2022Updated 4 years ago
- TABR-BERT: an Accurate and Robust BERT-based Transfer Learning Model for TCR-pMHC Interaction Prediction☆12Jul 19, 2024Updated last year
- ☆17Jun 24, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆49Nov 19, 2021Updated 4 years ago
- ☆22Oct 4, 2022Updated 3 years ago
- ☆12May 11, 2024Updated 2 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆95Apr 12, 2024Updated 2 years ago
- TFold v1.0☆36Jul 16, 2024Updated last year
- CLIP-based model for aligning epitopes to immune receptors☆11Apr 30, 2025Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆66Dec 17, 2025Updated 6 months ago
- A unified cross-attention model for predicting antigen binding specificity to both HLA and TCR molecules☆13May 29, 2026Updated 3 weeks ago
- Analysis and design of protein-protein or protein-peptide interactions based on atlas database.☆15Sep 27, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆24Mar 19, 2025Updated last year
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆31Jul 12, 2025Updated 11 months ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆60May 4, 2022Updated 4 years ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆18Apr 22, 2024Updated 2 years ago
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆81Apr 1, 2023Updated 3 years ago
- ☆50Mar 30, 2026Updated 2 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆174Dec 24, 2023Updated 2 years ago
- Predictor of TCR-epitope interactions☆36Sep 9, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆35Apr 1, 2022Updated 4 years ago
- ☆15Nov 13, 2023Updated 2 years ago
- Features Based Conformational Clustering of MD trajectories. See details at:☆10Nov 20, 2025Updated 6 months ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Apr 22, 2025Updated last year
- predicting peptide-protein interactions☆141Dec 23, 2023Updated 2 years ago
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- flexible CDR based distance metrics☆72Dec 16, 2025Updated 6 months ago
- Official implementation of CP-Composer. It is the released code of 《Zero-Shot Cyclic Peptide Design via Composable Geometric Constraints》…☆28Aug 6, 2025Updated 10 months ago
- ☆13Apr 1, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 9 months ago
- PPGFlowECG: Latent Rectified Flow with Cross-Modal Encoding for PPG-Guided ECG Generation and Cardiovascular Disease Detection☆25Jan 21, 2026Updated 4 months ago
- Official PyTorch implementation of "ProteinMAE: Masked Autoencoder for Protein Surface Self-supervised Learning".☆18May 7, 2024Updated 2 years ago
- ☆53Apr 23, 2026Updated last month
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 3 years ago
- ☆93Sep 7, 2022Updated 3 years ago
- ☆29Oct 22, 2024Updated last year