Alternatives and similar repositories for DeepAIR

Users that are interested in DeepAIR are comparing it to the libraries listed below

• a96123155 / TransPHLA-AOMP
  ☆44Updated 3 years ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆80Updated 2 years ago
• viragbioinfo / IMMREP_2022_TCRSpecificity
  ☆19Updated 2 years ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆15Updated 4 years ago
• JiangBioLab / DLpTCR
  Predicting immunogenic peptide recognized by TCR through ensemble deep learning
  ☆15Updated last year
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆53Updated last year
• ShenLab / gMVP
  ☆21Updated 2 years ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆75Updated last year
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆68Updated 2 years ago
• TencentAILabHealthcare / ER-BERT
  ☆11Updated last year
• lulab / OligoFormer
  ☆24Updated 3 weeks ago
• myzhengSIMM / TranSiGen
  ☆30Updated 4 months ago
• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆18Updated 2 months ago
• jianglikun / DeepTTC
  DeepTTC: a transformer-based model for predicting cancer drug response
  ☆16Updated 2 years ago
• bsml320 / VAEN
  A deep generative neural network based approach to impute drug response
  ☆20Updated 4 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆34Updated 3 years ago
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆32Updated 3 years ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆53Updated 3 years ago
• bm2-lab / PanPep
  ☆49Updated last year
• haiyuan-yu-lab / PIONEER
  ☆25Updated 5 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆43Updated 2 years ago
• a96123155 / UTR-LM
  ☆85Updated 7 months ago
• piercelab / tcrmodel2
  ☆41Updated 2 months ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆99Updated 8 months ago
• Doudna-lab / GARNET_DL
  ☆37Updated 4 months ago
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆26Updated last month
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆73Updated 2 months ago
• CatIIIIIIII / RNAErnie
  Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"
  ☆47Updated 7 months ago
• TencentAILabHealthcare / SC-AIR-BERT
  ☆9Updated 2 years ago
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆18Updated 11 months ago