Freshwind-Bioinformatics / TABR-BERT
TABR-BERT: an Accurate and Robust BERT-based Transfer Learning Model for TCR-pMHC Interaction Prediction
☆10Updated 8 months ago
Alternatives and similar repositories for TABR-BERT:
Users that are interested in TABR-BERT are comparing it to the libraries listed below
- Large language modeling applied to T-cell receptor (TCR) sequences.☆52Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆50Updated 11 months ago
- ☆19Updated 2 years ago
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆40Updated 3 months ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆18Updated last week
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆26Updated 11 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆72Updated 11 months ago
- ☆78Updated 5 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆33Updated 3 years ago
- ☆11Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆66Updated 2 years ago
- HLA-II ligand predictor.☆43Updated last year
- ☆39Updated last week
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆79Updated 2 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆30Updated last month
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆44Updated 5 years ago
- ☆33Updated last week
- A visualization software for antibody multi sequence alignment☆18Updated 9 months ago
- ☆71Updated last year
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆17Updated 9 months ago
- ☆49Updated last year
- ☆34Updated last year
- MaveDB API☆13Updated this week
- TEIM: TCR-Epitope Interaction Modeling☆46Updated last year
- ☆16Updated 3 years ago
- ☆9Updated last year
- Computational Optimization of DNA Activity (CODA)☆56Updated 2 months ago
- Neural networks for deep mutational scanning data☆68Updated 4 months ago
- ☆41Updated 3 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆32Updated 3 years ago