Freshwind-Bioinformatics / TABR-BERTLinks
TABR-BERT: an Accurate and Robust BERT-based Transfer Learning Model for TCR-pMHC Interaction Prediction
☆13Updated last year
Alternatives and similar repositories for TABR-BERT
Users that are interested in TABR-BERT are comparing it to the libraries listed below
Sorting:
- Large language modeling applied to T-cell receptor (TCR) sequences.☆58Updated 3 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆89Updated 3 years ago
- ☆22Updated 3 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆88Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆75Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆67Updated 9 months ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆61Updated 2 weeks ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆60Updated last month
- ☆52Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- ☆95Updated last year
- ☆38Updated 2 years ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆37Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆191Updated last year
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆74Updated last year
- ☆48Updated 4 years ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆66Updated last year
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆24Updated 4 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆142Updated 11 months ago
- ☆86Updated 2 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Updated 4 years ago
- ☆14Updated last week
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 9 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Updated 4 months ago
- ☆28Updated last year
- Contextual AI models for single-cell protein biology☆96Updated 11 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆50Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆57Updated 6 years ago
- HLA-II ligand predictor.☆46Updated 2 years ago
- RiboNucleic Acid (RNA) Language Model☆151Updated 3 months ago