vinisalazar / BioProv
A provenance library for bioinformatics workflows 🧬 🔀 📝
☆14Updated 3 years ago
Alternatives and similar repositories for BioProv
Users that are interested in BioProv are comparing it to the libraries listed below
Sorting:
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …☆18Updated 4 months ago
- Freelance bioinformaticians directory☆9Updated 2 years ago
- SQL support plugin for Nextflow☆26Updated 3 months ago
- deploy a snakemake pipeline directly from version control (under development)☆24Updated last month
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 4 years ago
- Visualization of the pan-genome output by panX☆63Updated 2 years ago
- map Illumina metagenomes to genomes!☆38Updated this week
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated 10 months ago
- Portable WDL workflows for IDseq production pipelines☆31Updated 3 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Updated 7 years ago
- Fast sequencing data quality metrics☆26Updated last month
- ☆14Updated 6 years ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated last month
- Workflows I find helpful for fungal genome annotation☆21Updated last year
- Build sourmash databases for genbank.☆12Updated 2 years ago
- Simon's Data Club - Reference data for Galaxy servers☆10Updated last year
- ☆14Updated last month
- PERF is an Exhaustive Repeat Finder☆33Updated 4 years ago
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆49Updated last year
- ☆13Updated 5 years ago
- Awesome resources related to Galaxy project☆12Updated 5 months ago
- Minotour API, web and client code☆30Updated 2 years ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆27Updated last year
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆21Updated 2 years ago
- Managing metadata and policy around metadata in NMDC☆2Updated last year
- SARS-CoV-2 variant calling and consensus assembly pipeline☆25Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- A collection of publications on comparison of high-throughput sequencing technologies.☆27Updated 4 months ago