cevo-public / Quantification-of-the-spread-of-a-SARS-CoV-2-variant
☆10Updated last year
Alternatives and similar repositories for Quantification-of-the-spread-of-a-SARS-CoV-2-variant:
Users that are interested in Quantification-of-the-spread-of-a-SARS-CoV-2-variant are comparing it to the libraries listed below
- R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…☆33Updated 3 weeks ago
- Programmatically interact with the GISAID database.☆76Updated 3 weeks ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆13Updated 2 weeks ago
- Estimating time trees from very large phylogenies☆26Updated 9 months ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last month
- Phylodynamic inference☆18Updated 4 years ago
- The Dinucleotide Quantification Python Package☆11Updated 3 years ago
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Updated 2 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆15Updated 2 years ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 2 years ago
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- Reconstruction of transmission trees using genomic data☆62Updated last year
- Plot microbiome time series in parallel☆26Updated last year
- Influenza data pipeline to automate genotyping assignment☆32Updated 2 months ago
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆20Updated 2 years ago
- ☆10Updated last week
- Reference-guided multiple sequence alignment of viral genomes☆68Updated 3 months ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆30Updated 3 weeks ago
- Scrapping tool for GISAID data regarding SARS-CoV-2☆41Updated last year
- Racmacs R package for performing antigenic cartography☆21Updated 10 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 2 months ago
- PhyDyn: Epidemiological modelling in BEAST☆22Updated 2 years ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- Global phylogenies of SARS-CoV-2 sequences☆86Updated last year
- Phylogenetics between and within hosts at once, all along the genome.☆48Updated 6 months ago
- Munge GenBank files into FASTA and tab-separated metadata☆14Updated last year
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆33Updated 4 years ago
- Qiime2 snakemake pipeline☆17Updated last year