cevo-public / Quantification-of-the-spread-of-a-SARS-CoV-2-variantLinks
☆10Updated 2 years ago
Alternatives and similar repositories for Quantification-of-the-spread-of-a-SARS-CoV-2-variant
Users that are interested in Quantification-of-the-spread-of-a-SARS-CoV-2-variant are comparing it to the libraries listed below
Sorting:
- Reconstruction of transmission trees using genomic data☆63Updated last year
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics)☆34Updated 2 weeks ago
- Programmatically interact with the GISAID database.☆78Updated last week
- Phylodynamic inference☆18Updated 5 years ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last week
- Global phylogenies of SARS-CoV-2 sequences☆86Updated last year
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Updated 2 years ago
- Racmacs R package for performing antigenic cartography☆23Updated last year
- ☆74Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 months ago
- Tutorial on Bayesian phylogenetic analysis☆46Updated 7 years ago
- PhyDyn: Epidemiological modelling in BEAST☆21Updated 2 years ago
- A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.☆19Updated last year
- Scalable relaxed clock phylogenetic dating☆25Updated 2 weeks ago
- Scrapping tool for GISAID data regarding SARS-CoV-2☆41Updated 2 years ago
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆17Updated 3 years ago
- Analysis of Phylogenetics and Evolution☆70Updated 2 months ago
- Creating plasmid maps inside ggplot.☆88Updated 8 months ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated 10 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- Genome wide orthology inference and dNdS estimation☆95Updated last year
- ☆67Updated 9 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated last year
- Estimating time trees from very large phylogenies☆27Updated last year
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- ☆18Updated 3 weeks ago
- diversity estimation under ecological networks☆84Updated 2 weeks ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- R We There Yet?☆31Updated 4 months ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated last month