☆10May 28, 2023Updated 2 years ago
Alternatives and similar repositories for Quantification-of-the-spread-of-a-SARS-CoV-2-variant
Users that are interested in Quantification-of-the-spread-of-a-SARS-CoV-2-variant are comparing it to the libraries listed below
Sorting:
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 3 months ago
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Apr 24, 2023Updated 2 years ago
- International SARS-CoV-2 surveillance☆38May 19, 2023Updated 2 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Nov 10, 2023Updated 2 years ago
- Sequences from HIV Easily Reconstructed☆28May 3, 2024Updated last year
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆28Dec 15, 2025Updated 2 months ago
- Modelling and simulation of a 3-RRR Spherical Parallel Manipulator☆11Apr 8, 2024Updated last year
- 書籍「Python自然言語処理入門」用サポートサイト☆13Mar 25, 2020Updated 5 years ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Feb 2, 2023Updated 3 years ago
- Covid-19 epidemiology - data and analysis☆11Dec 7, 2023Updated 2 years ago
- Codebase for WHO estimates of excess mortality associated with the COVID-19 pandemic☆12Feb 25, 2023Updated 3 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Ontology-aware neural network (ONN) for microbial community sample source tracking!☆10Oct 11, 2022Updated 3 years ago
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10May 3, 2018Updated 7 years ago
- Efficient stochastic gradient descent algorithms for the estimation of generalized matrix factorization models in R.☆12Dec 15, 2025Updated 2 months ago
- Repository for participants of the "Containers for HPC" training☆11Feb 11, 2026Updated 3 weeks ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Descriptive summaries of covid data for Belgium☆10Apr 23, 2021Updated 4 years ago
- A protein language model for learning the SARS-CoV-2 fitness landscape☆12Apr 22, 2025Updated 10 months ago
- ☆11Sep 11, 2024Updated last year
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- Distributed matrix classes and methods for the pbdR project.☆17Sep 29, 2024Updated last year
- networktools☆10Aug 4, 2025Updated 7 months ago
- Code repository for the Global Ant Genomics Alliance☆16Jun 16, 2025Updated 8 months ago
- R package for sparse VAR estimation☆12Feb 5, 2026Updated last month
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Source code for MA4270: Data Modelling and Computation on Transformers and Nadaraya-Watson Kernel Regression☆19May 29, 2024Updated last year
- An ESP-home based version of Flaura☆14Mar 27, 2023Updated 2 years ago
- ☆15May 1, 2025Updated 10 months ago
- littleBits javascript extension for Scratch 2.0☆19Aug 14, 2015Updated 10 years ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Jul 22, 2022Updated 3 years ago
- OpenBabel wrapper package for R☆10Feb 17, 2026Updated 3 weeks ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Regularization Paths for Huber Loss Regression and Quantile Regression Penalized by Lasso or Elastic-Net☆10Nov 9, 2024Updated last year
- Scrapping tool for GISAID data regarding SARS-CoV-2☆41May 22, 2023Updated 2 years ago
- Repository for participants of the "Version control with git" training☆13Feb 22, 2026Updated 2 weeks ago
- A MinION-based pipeline for tracking species biodiversity☆13Feb 19, 2024Updated 2 years ago
- Syclops is a tool for creating synthetic data from 3D virtual environments with photorealistic renderings and pixel-perfect annotations.☆15Jun 26, 2025Updated 8 months ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago