vanvalenlab / kiosk-console
DeepCell Kiosk Distribution for Kubernetes on GKE and AWS
☆35Updated last year
Alternatives and similar repositories for kiosk-console:
Users that are interested in kiosk-console are comparing it to the libraries listed below
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated 2 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- ☆23Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Aligning images acquired with the IBEX microscopy imaging technique☆17Updated 3 months ago
- Raw format to OME-TIFF converter☆50Updated last month
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 10 months ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 3 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 2 months ago
- Jupyter notebooks for CellProfiler and friends☆13Updated 7 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆22Updated 2 years ago
- CytoData 2016 – origin story☆18Updated 7 years ago
- Jupyter Notebooks for the Image Data Resource☆18Updated 2 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 9 years ago
- Algorithmic and Utility Extensions for the Imaris Program☆16Updated 6 months ago
- Cloud-based data annotation tools for biological images☆79Updated last year
- Histology Topography Cytometry Analysis Toolbox☆67Updated last year
- Minimum Information about Tissue Imaging☆20Updated last year
- ☆53Updated this week
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆52Updated 11 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 7 months ago
- Helper functions for working with inForm data.☆14Updated 2 years ago
- Python API and Jupyter widget for Vitessce☆44Updated last week
- ☆65Updated 2 years ago
- Predicting Cell Health with Morphological Profiles☆36Updated 3 years ago
- Analysis of smFISH data☆11Updated 6 years ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated 2 years ago
- Python package to export tensorflow models as DeepImageJ bundled models☆17Updated 2 years ago