vanvalenlab / deepcell-labelLinks
Cloud-based data annotation tools for biological images
☆81Updated last year
Alternatives and similar repositories for deepcell-label
Users that are interested in deepcell-label are comparing it to the libraries listed below
Sorting:
- ☆32Updated 2 months ago
- An introduction to deepcell and deep learning☆153Updated 11 months ago
- multimodal whole slide image registration in a graph structure☆94Updated last year
- Open source Python library for building bioimage analysis pipelines☆181Updated last week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆180Updated this week
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- ☆186Updated this week
- CellProfiler tutorial pipelines and images☆94Updated 2 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆68Updated last year
- PAthological QUpath Obsession - QuPath and Python conversations☆122Updated last month
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated 2 months ago
- QuPath extension for Segment Anything Model (SAM)☆121Updated 2 months ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆118Updated this week
- Piecewise alignment for layers of mosaics☆29Updated last month
- ☆85Updated 6 months ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Codebase for "A Foundation Model for Cell Segmentation"☆110Updated this week
- ☆34Updated last year
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆148Updated last week
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆80Updated 6 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆56Updated 11 months ago
- Multiple-choice microscopy pipeline☆135Updated last week
- Your Personal Assistant in Computational Bioimaging.☆44Updated 6 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆150Updated last month
- Raw format to OME-TIFF converter☆56Updated 3 weeks ago
- Read and write life sciences file formats☆141Updated 3 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆59Updated last year
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆121Updated last month
- QuPath extension for Cellsparse☆19Updated 5 months ago