vanvalenlab / deepcell-labelLinks
Cloud-based data annotation tools for biological images
☆81Updated last year
Alternatives and similar repositories for deepcell-label
Users that are interested in deepcell-label are comparing it to the libraries listed below
Sorting:
- ☆32Updated last month
- An introduction to deepcell and deep learning☆153Updated 10 months ago
- multimodal whole slide image registration in a graph structure☆94Updated last year
- ☆183Updated 2 months ago
- Open source Python library for building bioimage analysis pipelines☆180Updated this week
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated last month
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆179Updated this week
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- PAthological QUpath Obsession - QuPath and Python conversations☆122Updated 2 weeks ago
- Piecewise alignment for layers of mosaics☆29Updated 2 weeks ago
- QuPath extension for Segment Anything Model (SAM)☆117Updated last month
- Codebase for "A Foundation Model for Cell Segmentation"☆107Updated this week
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆79Updated 5 months ago
- ☆34Updated last year
- CellProfiler tutorial pipelines and images☆94Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆68Updated 11 months ago
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆119Updated 2 weeks ago
- ☆23Updated 2 years ago
- Multiple-choice microscopy pipeline☆136Updated last week
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆39Updated 2 weeks ago
- ☆87Updated 5 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆61Updated 4 months ago
- ☆65Updated 7 months ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆80Updated last year
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 3 years ago
- Segment Anything for Histopathology☆46Updated last week
- Integrated pipeline for multiplexed image analysis☆97Updated 5 months ago