vanvalenlab / deepcell-labelLinks
Cloud-based data annotation tools for biological images
☆84Updated last year
Alternatives and similar repositories for deepcell-label
Users that are interested in deepcell-label are comparing it to the libraries listed below
Sorting:
- ☆32Updated 6 months ago
- multimodal whole slide image registration in a graph structure☆100Updated last year
- An introduction to deepcell and deep learning☆156Updated last year
- Piecewise alignment for layers of mosaics☆35Updated 5 months ago
- Open source Python library for building bioimage analysis pipelines☆188Updated this week
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆25Updated last year
- Self-supervised models for encoding protein localization patterns from microscopy images☆80Updated 6 months ago
- ☆209Updated this week
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- CellProfiler tutorial pipelines and images☆99Updated this week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆192Updated this week
- PAthological QUpath Obsession - QuPath and Python conversations☆133Updated 5 months ago
- QuPath extension for Segment Anything Model (SAM)☆126Updated this week
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆139Updated this week
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆63Updated last year
- Multiple-choice microscopy pipeline☆145Updated last week
- ☆71Updated 11 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆88Updated 3 weeks ago
- Codebase for "A Foundation Model for Cell Segmentation"☆174Updated 2 months ago
- ☆24Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 2 months ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- ☆37Updated 2 years ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆34Updated 7 months ago
- ☆91Updated 3 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆153Updated 3 weeks ago
- CODEX data processing code☆12Updated 7 months ago
- computer vision models for single-cell phenotyping☆87Updated this week
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆32Updated last year
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆84Updated last year