vanvalenlab / deepcell-label
Cloud-based data annotation tools for biological images
☆79Updated last year
Alternatives and similar repositories for deepcell-label:
Users that are interested in deepcell-label are comparing it to the libraries listed below
- ☆156Updated this week
- ☆31Updated 2 years ago
- An introduction to deepcell and deep learning☆145Updated 6 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 7 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆62Updated 3 weeks ago
- ☆71Updated last month
- computer vision models for single-cell phenotyping☆45Updated this week
- CellProfiler tutorial pipelines and images☆93Updated this week
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 6 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆28Updated 9 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆81Updated 3 weeks ago
- Piecewise alignment for layers of mosaics☆24Updated last week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆76Updated this week
- multimodal whole slide image registration in a graph structure☆84Updated 9 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆156Updated this week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆53Updated 2 months ago
- ☆60Updated 2 months ago
- ☆32Updated last year
- Multiple-choice microscopy pipeline☆129Updated last month
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆53Updated last year
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- Cell tracker designed for tracking intestinal organoids☆21Updated last week
- Integrated pipeline for multiplexed image analysis☆87Updated 3 weeks ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- version 1 scripts for CODA☆44Updated 11 months ago
- StarDist plugin for ImageJ☆29Updated 2 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆22Updated 4 months ago
- ☆35Updated last week