RNA smFISH oligos/probes design tool
☆14Oct 14, 2026Updated 2 weeks ago
Alternatives and similar repositories for eFISHent
Users that are interested in eFISHent are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GPU accelerated post-processing for 2D or 3D imaging spatial transcriptomics data.☆10Oct 9, 2026Updated 2 weeks ago
- Threshold independent detection and localization of diffraction-limited spots.☆39Oct 13, 2026Updated 2 weeks ago
- Repository to automatically process Fluorescence In Situ Hybridization (FISH) images using Cellpose and BIG-FISH (FISH-quant v2).☆19Dec 16, 2024Updated last year
- Tigerfish☆13Jan 30, 2024Updated 2 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Pipeline for designing custom probes against human genes☆24Jan 30, 2026Updated 8 months ago
- Generating interfaces(CLI, Qt GUI, Dash web app) from a Python function or a command program.☆41Apr 1, 2023Updated 3 years ago
- A scalable machine learning pipeline for probe specificity prediction.☆14Aug 14, 2026Updated 2 months ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- Genome-scale design tool for oligo hybridization probes☆72May 19, 2021Updated 5 years ago
- ☆31Apr 26, 2024Updated 2 years ago
- Effortless, flexible, and powerful job execution engine.☆10Jul 24, 2025Updated last year
- Laboratory for Fluorescence Dynamics (LFD) file formats.☆12Oct 15, 2026Updated 2 weeks ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆55Feb 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Oct 23, 2024Updated 2 years ago
- ☆14Jun 28, 2026Updated 4 months ago
- Read Olympus image files (OIF and OIB).☆14Oct 16, 2026Updated last week
- Real-time, interactive exploration of 3D image stacks☆13Nov 25, 2019Updated 6 years ago
- Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling☆15Jul 11, 2024Updated 2 years ago
- PyFRAP: A Python based FRAP analysis tool box☆17Feb 1, 2026Updated 8 months ago
- A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).☆26Oct 21, 2026Updated last week
- DuckDB Extension for reading and writing FASTA and FASTQ Files☆21Jun 19, 2023Updated 3 years ago
- ☆36Dec 22, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Visualize genomic data using webgl and webworkers, in an effort to provide a fluid, high-performance user experience.☆11May 24, 2024Updated 2 years ago
- Read and write PicoQuant PTU and related files (PHU, PCK, PCO, PFS, PUS, PQRES, PQDAT, PQUNI, SPQR, and BIN).☆19Oct 17, 2026Updated last week
- ImageJ plugin for building figures☆16Sep 13, 2023Updated 3 years ago
- Notebooks to illustrate how BigFISH is working.☆12Sep 5, 2022Updated 4 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Oct 19, 2026Updated last week
- Genome-wide contact analysis using sklearn☆79Mar 23, 2024Updated 2 years ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 6 years ago
- ☆15Dec 13, 2020Updated 5 years ago
- Genome browser hub for the T2T genomes and resources☆34Oct 1, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A collection of Python Jupyter Notebooks with Generative Artificial Intelligence related contents☆17Updated this week
- ImJoy Plugin Engine for running Python plugins locally or remotely from ImJoy.io☆18Aug 16, 2022Updated 4 years ago
- [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan☆14May 13, 2020Updated 6 years ago
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆13Jun 28, 2024Updated 2 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 8 years ago
- Quick preview of HDF5 files on the command line☆13Oct 5, 2018Updated 8 years ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago