Metascape for Bioinformaticians (MSBio)
☆14Jun 30, 2021Updated 5 years ago
Alternatives and similar repositories for msbio
Users that are interested in msbio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Course repository for students enrolled in DSO560: Text Analytics and Natural Language Processing for the Spring 2021 Semester at USC.☆12May 7, 2021Updated 5 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 4 years ago
- Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)☆22Jun 16, 2026Updated 4 months ago
- Repository for the workshop "Best practices on development"☆15Mar 19, 2015Updated 11 years ago
- A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, Lo…☆20Jul 11, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- NGS Data Analysis Textbook Version 2 (Disease Genome Analysis)☆43May 7, 2021Updated 5 years ago
- STcompare is an R package for comparing spatial gene expression patterns across spatial transcriptomics (ST) datasets☆14Oct 19, 2026Updated last week
- AOE (All Of gene Expression): Index and meta-analysis of gene expression data that works☆12Apr 15, 2022Updated 4 years ago
- Cyclic Ordering by Periodic Structure☆15Oct 8, 2019Updated 7 years ago
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"☆15May 12, 2026Updated 5 months ago
- ☆14Jun 1, 2026Updated 4 months ago
- Find CpG islands in genome☆11Mar 27, 2020Updated 6 years ago
- interactive plots for differential expression analysis☆35Apr 30, 2026Updated 5 months ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆22Sep 17, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Machine Learning-based tool to assess the functional relevance of splice isoforms.☆12Feb 8, 2023Updated 3 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 3 years ago
- ☆16May 13, 2022Updated 4 years ago
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆12Apr 20, 2022Updated 4 years ago
- ☆23Aug 11, 2020Updated 6 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆11Aug 2, 2023Updated 3 years ago
- Imaging Mass Cytometry (IMC) file type support for napari☆13Jul 8, 2026Updated 3 months ago
- Plot stacked logos for single or multiple DNA, RNA and amino acid sequence☆17Apr 29, 2026Updated 6 months ago
- Exploring Isoform-specific interactions☆13Jul 23, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- fastx-utils using klib☆19Sep 1, 2020Updated 6 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Jun 27, 2025Updated last year
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 9 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated 2 years ago
- ☆23Jul 27, 2023Updated 3 years ago
- ☆13Sep 17, 2026Updated last month
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆14Jan 9, 2026Updated 9 months ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- A quick and flexible single-cell RNA-seq processing framework on the cloud☆39Dec 11, 2019Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 8 months ago
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated 6 months ago
- ☆18May 14, 2025Updated last year
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆14Apr 5, 2026Updated 6 months ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆11Jan 26, 2024Updated 2 years ago
- ☆12Dec 5, 2022Updated 3 years ago
- Examples of kallisto + sleuth☆11May 18, 2017Updated 9 years ago