vanvalenlab / deepcell-tracking
Track cells and build cell lineages
☆28Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for deepcell-tracking
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 weeks ago
- A python algorithm for tracking cells in 3D time lapse images.☆52Updated 2 months ago
- Cell tracking and segmentation software☆94Updated this week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆70Updated this week
- Cloud-based data annotation tools for biological images☆76Updated 9 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆48Updated 3 weeks ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆31Updated 2 years ago
- ☆52Updated 2 weeks ago
- Open source Python library for building bioimage analysis pipelines☆125Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆51Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆133Updated this week
- ☆66Updated last week
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆33Updated 3 weeks ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 weeks ago
- StarDist plugin for napari☆36Updated 2 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 weeks ago
- The repository of NEUBIAS textbook 2021☆10Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated last month
- A napari plugin for clustering objects according to their properties.☆80Updated this week
- ☆30Updated 2 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆47Updated last month
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆63Updated 3 weeks ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆55Updated last week
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆18Updated last year
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- StarDist plugin for ImageJ☆27Updated 2 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆112Updated 9 months ago
- ☆21Updated 2 months ago
- Learn morphological states of dynamic cells☆12Updated last year