Track cells and build cell lineages
☆35Aug 6, 2024Updated last year
Alternatives and similar repositories for deepcell-tracking
Users that are interested in deepcell-tracking are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Feb 5, 2026Updated 2 months ago
- ☆17Jun 15, 2023Updated 2 years ago
- MoTT is the official repository of the paper "A Motion Transformer for Single Particle Tracking in Fluorescence Microscopy Images".☆13Jul 19, 2024Updated last year
- Cloud-based data annotation tools for biological images☆86Feb 14, 2024Updated 2 years ago
- napari plugin for trackastra☆17Nov 12, 2025Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆39Apr 22, 2026Updated last week
- [ECCV 2022] Official PyTorch implementation of the paper - Graph Neural Network for Cell Tracking in Microscopy Videos☆78Nov 30, 2022Updated 3 years ago
- Learn morphological states of dynamic cells☆13Apr 16, 2023Updated 3 years ago
- Transformer-based cell tracking for live-cell microscopy☆130Mar 31, 2026Updated last month
- A python algorithm for tracking cells in 3D deforming organs☆69Nov 13, 2025Updated 5 months ago
- Threshold independent detection and localization of diffraction-limited spots.☆39Apr 8, 2026Updated 3 weeks ago
- An automated imageJ macro which can be used to detect and measure the size of particles in images, maps of images or videos☆12Mar 25, 2024Updated 2 years ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Sep 17, 2020Updated 5 years ago
- Lineage Mapper Fiji plugin and MATLAB source code☆19Aug 4, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DeepCell Kiosk Distribution for Kubernetes on GKE and AWS☆37Jul 12, 2023Updated 2 years ago
- Multi-task UNet for medical image classification and saliency prediction☆15Jan 29, 2022Updated 4 years ago
- Experimental Docker file for building a replicable VisualSFM environment☆10Jan 16, 2015Updated 11 years ago
- An image analysis tool for measuring microorganism colony growth☆12Dec 12, 2025Updated 4 months ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- ☆11Mar 24, 2023Updated 3 years ago
- Computes 2D peak prominence☆12Nov 12, 2018Updated 7 years ago
- Frailty analysis including FRIGHT age and AFRAID clock☆12Apr 3, 2020Updated 6 years ago
- ☆12Dec 2, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Go iRODS Client☆12Updated this week
- Bayesian multi-object tracking☆331Apr 1, 2026Updated last month
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Feb 22, 2022Updated 4 years ago
- Cell Tracking metrics and tools for the CellTrackingChallenge as described in 'CHOTA: A Higher Order Accuracy Metric for Cell Tracking'☆30Mar 12, 2026Updated last month
- ☆14Sep 29, 2020Updated 5 years ago
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Sep 15, 2025Updated 7 months ago
- ☆14Feb 21, 2024Updated 2 years ago
- A fast & modular Python framework for biological object tracking in 2D and 3D microscopy.☆21Mar 20, 2026Updated last month
- Lectures for a napari training course☆52Aug 30, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Exercise repository for the "Deep Learning for Microscopy Image Analysis" course at the MBL.☆10Aug 31, 2022Updated 3 years ago
- UC2 micrometer stage☆12Jul 5, 2021Updated 4 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆14Apr 24, 2024Updated 2 years ago
- ☆13Mar 26, 2025Updated last year
- ☆13Apr 27, 2020Updated 6 years ago
- A full graphical interface for the Raspberry Pi PiCamera. Written in Python using Tkinter.☆16May 22, 2021Updated 4 years ago