Track cells and build cell lineages
☆35Aug 6, 2024Updated last year
Alternatives and similar repositories for deepcell-tracking
Users that are interested in deepcell-tracking are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Feb 5, 2026Updated 3 months ago
- ☆17Jun 15, 2023Updated 2 years ago
- MoTT is the official repository of the paper "A Motion Transformer for Single Particle Tracking in Fluorescence Microscopy Images".☆13Jul 19, 2024Updated last year
- Cloud-based data annotation tools for biological images☆86Feb 14, 2024Updated 2 years ago
- Deep Learning Library for Single Cell Analysis☆473Aug 30, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- napari plugin for trackastra☆18Nov 12, 2025Updated 6 months ago
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆41May 14, 2026Updated last week
- [ECCV 2022] Official PyTorch implementation of the paper - Graph Neural Network for Cell Tracking in Microscopy Videos☆79Nov 30, 2022Updated 3 years ago
- Transformer-based cell tracking for live-cell microscopy☆130Mar 31, 2026Updated last month
- A python algorithm for tracking cells in 3D deforming organs☆69Nov 13, 2025Updated 6 months ago
- Threshold independent detection and localization of diffraction-limited spots.☆39Apr 8, 2026Updated last month
- An automated imageJ macro which can be used to detect and measure the size of particles in images, maps of images or videos☆12Mar 25, 2024Updated 2 years ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Sep 17, 2020Updated 5 years ago
- Lineage Mapper Fiji plugin and MATLAB source code☆19Aug 4, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- My Spacemacs configuration.☆11Jan 20, 2019Updated 7 years ago
- Multi-task UNet for medical image classification and saliency prediction☆15Jan 29, 2022Updated 4 years ago
- Experimental Docker file for building a replicable VisualSFM environment☆10Jan 16, 2015Updated 11 years ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- ☆11Mar 24, 2023Updated 3 years ago
- Computes 2D peak prominence☆12Nov 12, 2018Updated 7 years ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Jun 6, 2023Updated 2 years ago
- ☆12Dec 2, 2020Updated 5 years ago
- ☆13Mar 22, 2018Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Go iRODS Client☆12Apr 29, 2026Updated 3 weeks ago
- Bayesian multi-object tracking☆333Apr 1, 2026Updated last month
- This Python application shows how to create a Microsoft Graph connector for GitHub repos and issues.☆15Feb 24, 2025Updated last year
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Feb 22, 2022Updated 4 years ago
- ☆14Sep 29, 2020Updated 5 years ago
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Sep 15, 2025Updated 8 months ago
- A fast & modular Python framework for biological object tracking in 2D and 3D microscopy.☆21May 15, 2026Updated last week
- Lectures for a napari training course☆52Aug 30, 2023Updated 2 years ago
- Exercise repository for the "Deep Learning for Microscopy Image Analysis" course at the MBL.☆10Aug 31, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆14Jan 25, 2024Updated 2 years ago
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆14Apr 24, 2024Updated 2 years ago
- ☆13Mar 26, 2025Updated last year
- ☆13Apr 27, 2020Updated 6 years ago
- A full graphical interface for the Raspberry Pi PiCamera. Written in Python using Tkinter.☆16May 22, 2021Updated 5 years ago
- ☆11Jul 3, 2023Updated 2 years ago
- ☆11Jan 17, 2025Updated last year