vanvalenlab / deepcell-tracking
Track cells and build cell lineages
☆34Updated 9 months ago
Alternatives and similar repositories for deepcell-tracking
Users that are interested in deepcell-tracking are comparing it to the libraries listed below
Sorting:
- A python algorithm for tracking cells in 3D time lapse images.☆59Updated last month
- ☆70Updated last week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆78Updated 3 weeks ago
- Cell tracking and segmentation software☆114Updated this week
- Cloud-based data annotation tools for biological images☆79Updated last year
- A napari plugin for clustering objects according to their properties.☆84Updated this week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆158Updated last week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆81Updated this week
- StarDist plugin for napari☆38Updated 8 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 6 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last month
- StarDist plugin for ImageJ☆29Updated 3 years ago
- ☆71Updated last month
- Accurate and efficient spot detection for microscopy data☆75Updated 3 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated last week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆36Updated 2 years ago
- Cell tracker designed for tracking intestinal organoids☆21Updated last week
- Tools for distributed alignment of massive images☆81Updated last month
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- Cookiecutter for napari plugins☆69Updated 6 months ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated last week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆71Updated this week
- Use ImageJ functionality from napari☆31Updated last month
- ☆23Updated this week
- ☆31Updated 2 years ago
- Particle tracking by solving linear assignment problem.☆52Updated last week
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 2 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 6 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆65Updated last month