vanvalenlab / deepcell-tracking
Track cells and build cell lineages
☆27Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for deepcell-tracking
- Cell tracking and segmentation software☆93Updated this week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆69Updated this week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆47Updated 2 weeks ago
- Cloud-based data annotation tools for biological images☆76Updated 8 months ago
- Open source Python library for building bioimage analysis pipelines☆124Updated this week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆131Updated this week
- A napari plugin for clustering objects according to their properties.☆80Updated last week
- GPU-accelerated general purpose image processing and image analysis in napari☆34Updated 2 weeks ago
- ☆30Updated 2 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 2 weeks ago
- ☆66Updated 4 months ago
- ☆21Updated last month
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆55Updated this week
- ☆51Updated this week
- A python algorithm for tracking cells in 3D time lapse images.☆52Updated 2 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆51Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆47Updated last month
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆31Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated last month
- StarDist plugin for napari☆36Updated 2 months ago
- The repository of NEUBIAS textbook 2021☆10Updated 2 years ago
- Resources for teaching/preparing to teach bioimage analysis☆48Updated last week
- Python package for deep learning based image to image transformation☆49Updated 5 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆33Updated last week
- Learn morphological states of dynamic cells☆12Updated last year
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆112Updated 8 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆53Updated last week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last week