Track cells and build cell lineages
☆35Aug 6, 2024Updated last year
Alternatives and similar repositories for deepcell-tracking
Users that are interested in deepcell-tracking are comparing it to the libraries listed below
Sorting:
- ☆10Feb 5, 2026Updated 3 weeks ago
- MoTT is the official repository of the paper "A Motion Transformer for Single Particle Tracking in Fluorescence Microscopy Images".☆12Jul 19, 2024Updated last year
- ☆15Jun 15, 2023Updated 2 years ago
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆38Feb 2, 2026Updated 3 weeks ago
- An automated imageJ macro which can be used to detect and measure the size of particles in images, maps of images or videos☆11Mar 25, 2024Updated last year
- Transformer-based cell tracking for live-cell microscopy☆124Feb 1, 2026Updated last month
- A python algorithm for tracking cells in 3D deforming organs☆68Nov 13, 2025Updated 3 months ago
- Learn morphological states of dynamic cells☆12Apr 16, 2023Updated 2 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆38Nov 1, 2022Updated 3 years ago
- Biological Mutliple Object Tracking (2D/3D)☆20Dec 11, 2025Updated 2 months ago
- Accurate and efficient spot detection for microscopy data☆117Feb 5, 2026Updated 3 weeks ago
- Cell Tracking metrics and tools for the CellTrackingChallenge as described in 'CHOTA: A Higher Order Accuracy Metric for Cell Tracking'☆28Jan 20, 2026Updated last month
- Multi-Object Tracker using Integer Linear Equations☆38Dec 18, 2025Updated 2 months ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Jun 6, 2023Updated 2 years ago
- A deep learning framework for synaptic event detection☆17Feb 11, 2026Updated 2 weeks ago
- This repository contains projects of Escort and Estag☆26Mar 27, 2025Updated 11 months ago
- A deep learning model for single cell segmentation from microsopy images.☆36Updated this week
- Bayesian multi-object tracking☆331Jan 9, 2026Updated last month
- An introduction to deepcell and deep learning☆156Oct 21, 2024Updated last year
- ☆12Updated this week
- KNX node applications☆13Sep 22, 2017Updated 8 years ago
- ☆10Jan 27, 2022Updated 4 years ago
- Exercise repository for the "Deep Learning for Microscopy Image Analysis" course at the MBL.☆10Aug 31, 2022Updated 3 years ago
- DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.☆13Updated this week
- This Python application shows how to create a Microsoft Graph connector for GitHub repos and issues.☆15Feb 24, 2025Updated last year
- ☆14Feb 21, 2024Updated 2 years ago
- This is a crawler that can scrap Facebook public posts, comments and also scrap the mentions & reactions.☆10Dec 7, 2022Updated 3 years ago
- DeepCell Kiosk Distribution for Kubernetes on GKE and AWS☆37Jul 12, 2023Updated 2 years ago
- Stock prediction done using RNN and LTSM to resolve vanishing gradient problem. Dataset used is obtained from Pakistan Stock Exchange☆10Dec 6, 2018Updated 7 years ago
- DiTech2017☆11Apr 11, 2017Updated 8 years ago
- Spectrogram-UMAP-based Temporal Link Embedding☆11Dec 22, 2023Updated 2 years ago
- Auction Algorithm for Sparse Linear Assignment Problems☆13Mar 15, 2021Updated 4 years ago
- This is the repository for the openSIM project which integrates structured illumination microscopy into the UC2-system.☆12May 25, 2022Updated 3 years ago
- Multi-task UNet for medical image classification and saliency prediction☆15Jan 29, 2022Updated 4 years ago
- Microscopic Traffic Simulation with OpenStreetMap Data☆14Apr 18, 2021Updated 4 years ago
- A curated list of scientific image analysis resources and software tools.☆33Feb 4, 2026Updated 3 weeks ago
- LISBET Is a Social BEhavior Transformer (LISBET)☆12Feb 10, 2026Updated 2 weeks ago
- Enable WHIP/WHEP support in FFmpeg using libdatachannel☆22May 19, 2025Updated 9 months ago
- Computation using data flow graphs for scalable machine learning☆17Feb 10, 2025Updated last year