haesleinhuepf / BioImageAnalysisNotebooksLinks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
☆153Updated 3 weeks ago
Alternatives and similar repositories for BioImageAnalysisNotebooks
Users that are interested in BioImageAnalysisNotebooks are comparing it to the libraries listed below
Sorting:
- A napari plugin for clustering objects according to their properties.☆90Updated 2 weeks ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆232Updated 2 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- ☆91Updated 3 months ago
- StarDist plugin for napari☆38Updated last year
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆177Updated 3 weeks ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆192Updated this week
- An introduction to bioimage analysis - http://bioimagebook.github.io☆76Updated 5 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆162Updated last week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆84Updated 2 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 2 months ago
- Open source Python library for building bioimage analysis pipelines☆188Updated this week
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last month
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- GPU-accelerated image processing for everyone☆55Updated last year
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆159Updated 2 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆48Updated last week
- Lectures for a napari training course☆50Updated 2 years ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆64Updated 2 years ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆88Updated 3 weeks ago
- Cell tracking and segmentation software☆168Updated this week
- ☆51Updated 9 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Updated last month
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆130Updated 6 months ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Updated 7 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆79Updated last year