Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
☆158Jan 11, 2026Updated 6 months ago
Alternatives and similar repositories for BioImageAnalysisNotebooks
Users that are interested in BioImageAnalysisNotebooks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆62Apr 24, 2026Updated 3 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆18Nov 10, 2022Updated 3 years ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆242Sep 11, 2023Updated 2 years ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆98Updated this week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆102Feb 17, 2023Updated 3 years ago
- A napari plugin for clustering objects according to their properties.☆90Updated this week
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated 2 years ago
- Resources for teaching/preparing to teach bioimage analysis☆63Updated this week
- A napari plugin to view and edit layer metadata☆13Updated this week
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 6 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Jun 3, 2026Updated 2 months ago
- Optimize image processing workflows in napari☆17May 1, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆136Apr 9, 2020Updated 6 years ago
- ☆52May 1, 2025Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- Cookiecutter for napari plugins☆73Nov 6, 2024Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆57May 1, 2025Updated last year
- ☆39May 29, 2026Updated 2 months ago
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆649Mar 29, 2026Updated 4 months ago
- ☆15Jul 29, 2022Updated 4 years ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆24May 16, 2023Updated 3 years ago
- Linking napari layers with Matplotlib plots☆45Jul 1, 2026Updated last month
- Course on Deep Learning for imaging using PyTorch☆16Feb 2, 2022Updated 4 years ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆38Jun 25, 2026Updated last month
- ☆16Updated this week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆183Jul 30, 2026Updated last week
- ☆234Jul 30, 2026Updated last week
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆126Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated last month
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated last year
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆136Jul 28, 2026Updated last week
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆21Feb 10, 2026Updated 6 months ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated 2 years ago
- OMERO.server production docker image☆17Updated this week
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆123May 22, 2026Updated 2 months ago