haesleinhuepf / BioImageAnalysisNotebooksLinks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
☆141Updated last month
Alternatives and similar repositories for BioImageAnalysisNotebooks
Users that are interested in BioImageAnalysisNotebooks are comparing it to the libraries listed below
Sorting:
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆220Updated last year
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆165Updated 2 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆134Updated 5 years ago
- StarDist plugin for napari☆40Updated 11 months ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆72Updated last month
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated 3 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆178Updated this week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- ☆85Updated 4 months ago
- ☆51Updated 3 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 3 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 9 months ago
- A platform for compiling, analyzing, and exploring tracking data☆46Updated 4 months ago
- Cell tracking and segmentation software☆127Updated this week
- Open source Python library for building bioimage analysis pipelines☆178Updated this week
- Lectures for a napari training course☆50Updated last year
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆144Updated 5 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated 3 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 2 weeks ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆80Updated 3 weeks ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Updated last month
- Image reading, metadata management, and image writing for Microscopy images in Python☆94Updated last month
- Track and lineage visualization with btrack and Napari☆45Updated 9 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆74Updated 4 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 10 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆145Updated 2 weeks ago