Omnipose: a high-precision solution for morphology-independent cell segmentation
☆166Sep 11, 2026Updated last month
Alternatives and similar repositories for omnipose
Users that are interested in omnipose are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- OmniSegger - from the Wiggins Lab at UW☆11Jun 18, 2026Updated 4 months ago
- ☆27Sep 11, 2026Updated last month
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆21Oct 16, 2026Updated 2 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆74Sep 29, 2024Updated 2 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆25Oct 5, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆2,422Jun 14, 2026Updated 4 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆133Updated this week
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Jul 22, 2024Updated 2 years ago
- Interprocess environment manager 🧊☆19Oct 20, 2026Updated last week
- ☆14Jun 28, 2026Updated 4 months ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆13Jan 24, 2022Updated 4 years ago
- Cell tracking and segmentation software☆210Oct 9, 2026Updated 3 weeks ago
- ☆15Sep 4, 2026Updated last month
- A completely automated MATLAB-based trainable image cell segmentation, fluorescence quantification and analysis suite, particularly well …☆33Dec 1, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- StarDist - Object Detection with Star-convex Shapes☆1,286Feb 14, 2026Updated 8 months ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 3 years ago
- A recast of cell segmentation models built on the Burn deep learning framework.☆25Oct 21, 2026Updated last week
- Fast 4-coloring of instance segmentation label images (N-color relabeling) for Python, C++ core☆16Sep 28, 2026Updated last month
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆204Updated this week
- Scientific Dataset Quality Control and Data Exploration Tool☆29Updated this week
- ☆13Jun 18, 2026Updated 4 months ago
- Tiled processing of arbitrarily large images — any image, any function.☆19Updated this week
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆67Oct 27, 2024Updated 2 years ago
- ☆11Jul 15, 2024Updated 2 years ago
- ☆13Oct 20, 2026Updated last week
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆49Jun 7, 2026Updated 4 months ago
- Cloud-based data annotation tools for biological images☆85Jun 4, 2026Updated 4 months ago
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆656Updated this week
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆135Oct 22, 2026Updated last week
- A napari plugin for clustering objects according to their properties.☆91Updated this week
- Java implementation of Appose ☕☆15Oct 20, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The ImageJ plugin to run deep-learning models☆99Oct 8, 2026Updated 3 weeks ago
- Accurate and efficient spot detection for microscopy data☆147Jun 8, 2026Updated 4 months ago
- ☆39Oct 22, 2026Updated last week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- A simple automated feedback microscopy tool for live tracking of moving samples.☆15May 28, 2026Updated 5 months ago
- Automated batch processing of tissue microscopy image data with a text-based interface☆10Mar 24, 2026Updated 7 months ago
- A python algorithm for tracking cells in 3D deforming organs☆70Nov 13, 2025Updated 11 months ago