Omnipose: a high-precision solution for morphology-independent cell segmentation
☆162Sep 11, 2026Updated last week
Alternatives and similar repositories for omnipose
Users that are interested in omnipose are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- OmniSegger - from the Wiggins Lab at UW☆11Jun 18, 2026Updated 3 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Jul 22, 2024Updated 2 years ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- ☆27Sep 11, 2026Updated last week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Jul 29, 2022Updated 4 years ago
- StarDist plugin for napari☆41Aug 24, 2024Updated 2 years ago
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 3 months ago
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆2,368Jun 14, 2026Updated 3 months ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆13Jan 24, 2022Updated 4 years ago
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 4, 2026Updated 2 weeks ago
- A completely automated MATLAB-based trainable image cell segmentation, fluorescence quantification and analysis suite, particularly well …☆32Dec 1, 2020Updated 5 years ago
- Cloud-based data annotation tools for biological images☆85Jun 4, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- StarDist - Object Detection with Star-convex Shapes☆1,266Feb 14, 2026Updated 7 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆21Feb 10, 2026Updated 7 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆74Sep 29, 2024Updated last year
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 5 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆42Jun 29, 2026Updated 2 months ago
- ☆18Jun 15, 2023Updated 3 years ago
- Web Image Processing Pipeline (WIPP)☆27Dec 19, 2025Updated 9 months ago
- Cell tracking and segmentation software☆209Aug 13, 2026Updated last month
- Legacy project superseded by https://github.com/morphonets/SNT☆13Jul 19, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Affinity based segmentation algorithms and tools☆12May 12, 2025Updated last year
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated 11 months ago
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆41Sep 10, 2026Updated last week
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆95Jul 6, 2026Updated 2 months ago
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆652Updated this week
- ☆10Feb 5, 2026Updated 7 months ago
- A python package for fitting splines.☆24Jul 27, 2026Updated last month
- Cookiecutter for napari plugins☆72Nov 6, 2024Updated last year
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆18Nov 10, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Java Image Processing Pipeline (JIPipe) is a graphical batch processing language for the ImageJ ecosystem☆18Sep 11, 2026Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- Bayesian multi-object tracking☆335Apr 1, 2026Updated 5 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆132Updated this week
- Version 3 of Python mother machine analysis code☆12Jun 22, 2023Updated 3 years ago
- ☆19Jan 13, 2025Updated last year
- TrackMate is your buddy for your everyday tracking.☆241Aug 28, 2026Updated 3 weeks ago