Alternatives and similar repositories for omnipose:

Users that are interested in omnipose are comparing it to the libraries listed below

• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆78Updated last year
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆149Updated last week
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 5 months ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆75Updated 2 weeks ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆139Updated this week
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆106Updated last week
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆211Updated 2 months ago
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆114Updated last year
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆73Updated last week
• instanseg / instanseg
  ☆150Updated 2 weeks ago
• vanvalenlab / deepcell-tracking
  Track cells and build cell lineages
  ☆33Updated 7 months ago
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆144Updated 5 months ago
• peng-lab / BaSiCPy
  ☆68Updated this week
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆109Updated 2 weeks ago
• AllenCell / aics-ml-segmentation
  ☆31Updated 2 years ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 4 months ago
• weigertlab / trackastra
  ☆60Updated 3 weeks ago
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆65Updated last month
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 3 months ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆55Updated last month
• FZJ-INM1-BDA / celldetection
  Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
  ☆130Updated this week
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆86Updated this week
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆133Updated last month
• bioimage-io / bioimage.io
  Website for the BioImage Model zoo -- a model zoo for bioimage analysis.
  ☆59Updated last week
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆75Updated 6 months ago
• BiAPoL / Bio-image_Analysis_with_Python
  Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…
  ☆204Updated last year
• mehta-lab / VisCy
  computer vision models for single-cell phenotyping
  ☆43Updated this week
• HenriquesLab / DeepBacs
  ☆31Updated 2 years ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆82Updated this week