Alternatives and similar repositories for dl-for-micro:

Users that are interested in dl-for-micro are comparing it to the libraries listed below

• volume-em / empanada-napari
  Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
  ☆22Updated 7 months ago
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆26Updated 4 months ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated last month
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆30Updated 3 weeks ago
• CamachoDejay / teaching-bioimage-analysis-python
  A place to collect information used in lectures, demos, workshops, etc.
  ☆17Updated 6 months ago
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆23Updated 10 months ago
• True-North-Intelligent-Algorithms / notebooks-and-napari-widgets-for-dl
  A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.
  ☆13Updated 2 weeks ago
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆29Updated last month
• guiwitz / napari-convpaint
  Segment images by pixel classification based on pre-trained convolutional layer feature extraction
  ☆31Updated 2 months ago
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆18Updated last year
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆49Updated 3 weeks ago
• haesleinhuepf / devbio-napari
  ☆47Updated 5 months ago
• weigertlab / trackastra
  ☆60Updated last month
• BiAPoL / PoL-BioImage-Analysis-TS-GPU-Accelerated-Image-Analysis
  PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track
  ☆25Updated 9 months ago
• guiwitz / napari-serialcellpose
  ☆15Updated 2 years ago
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆23Updated 6 months ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆21Updated last week
• zoccoler / napari-flim-phasor-plotter
  ☆10Updated this week
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆65Updated last month
• Sentinal4D / cellshape
  3D shape analysis using deep learning
  ☆24Updated last year
• stardist / stardist-napari
  StarDist plugin for napari
  ☆37Updated 7 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆82Updated this week
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated last year
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆75Updated 3 weeks ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 3 months ago
• RoccoDAnt / napari-zelda
  ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari
  ☆20Updated 4 months ago
• baigouy / EPySeg
  ☆22Updated last year
• weigertlab / napari-trackastra
  napari plugin for trackastra
  ☆13Updated 5 months ago
• lowe-lab-ucl / cnn-annotator
  Annotate microscopy images for CNN classifier
  ☆11Updated 2 years ago
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆30Updated last week