Course and exercises on deep learning for microscopy image analysis
☆24Nov 25, 2025Updated 7 months ago
Alternatives and similar repositories for dl-for-micro
Users that are interested in dl-for-micro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Affinity based segmentation algorithms and tools☆12May 12, 2025Updated last year
- Multi-Object Tracking with Integer Linear Equations☆39Updated this week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆86Mar 28, 2026Updated 3 months ago
- ☆11May 6, 2024Updated 2 years ago
- R scripts to generate publication summary figures☆24Jun 13, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- ☆52May 1, 2025Updated last year
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Jun 22, 2026Updated last week
- Distributed segmentation for bio-image-analysis☆42Jun 5, 2026Updated 3 weeks ago
- Segment Anything for Microscopy☆695Updated this week
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆96Mar 24, 2026Updated 3 months ago
- Analysis of TrackMate XML outputs in R☆17Mar 7, 2026Updated 3 months ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 6 months ago
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆127Jun 23, 2026Updated last week
- Gene Ontology (GO) enrichment analysis☆12Aug 7, 2023Updated 2 years ago
- Rxiv-Maker is a GitHub-native framework that converts markdown into a publication-ready PDF. It automates scientific preprint generation …☆33Jun 18, 2026Updated 2 weeks ago
- Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers☆10Sep 28, 2023Updated 2 years ago
- Running compute-intense parts of BigStitcher distributed☆30Updated this week
- Visual interpretability of image-based classification models by generative latent space disentanglement☆13Jun 16, 2025Updated last year
- Python implementation of Underdamped Langevin Inference, a method to infer the dynamical equation of underdamped stochastic systems from …☆17Jun 20, 2025Updated last year
- Explainable AI model of cell behavior☆20Apr 4, 2023Updated 3 years ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆42Jun 13, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A nifty library for graph based image segmentation.☆47May 3, 2025Updated last year
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆33Mar 24, 2026Updated 3 months ago
- ☆43Jul 23, 2024Updated last year
- Evolve new colour palettes☆15Feb 21, 2021Updated 5 years ago
- GAM workshop for NHS-R Community Conference 2023☆13Aug 8, 2025Updated 10 months ago
- ☆13Aug 12, 2022Updated 3 years ago
- The mutex watershed for image segmentation.☆68May 6, 2021Updated 5 years ago
- A platform for compiling, analyzing, and exploring tracking data☆50Feb 2, 2026Updated 5 months ago
- ☆20Jun 11, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Liquid handling robot for in situ serial multiplexing☆18Apr 7, 2017Updated 9 years ago
- Segment Anything for Histopathology☆67Jun 6, 2026Updated 3 weeks ago
- Code required to reproduce results from the book chapter "Machine learning from omics data" (Springer Protocols, 2021)☆15Apr 19, 2023Updated 3 years ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- ☆25May 30, 2025Updated last year
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆41Jan 30, 2024Updated 2 years ago
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆647Mar 29, 2026Updated 3 months ago