segment-anything-models-java / SAMJ-IJLinks
An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
☆73Updated last month
Alternatives and similar repositories for SAMJ-IJ
Users that are interested in SAMJ-IJ are comparing it to the libraries listed below
Sorting:
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated last week
- Course and exercises on deep learning for microscopy image analysis☆19Updated 2 months ago
- ☆51Updated 3 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆178Updated this week
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- ☆11Updated 5 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆74Updated 4 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆98Updated this week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆143Updated 2 months ago
- Transformer-based cell tracking for live-cell microscopy☆82Updated last week
- StarDist plugin for napari☆40Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 3 months ago
- Cell tracking and segmentation software☆134Updated last week
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- An introduction to bioimage analysis - http://bioimagebook.github.io☆72Updated 2 weeks ago
- ☆87Updated 5 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 3 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆82Updated last week
- ☆19Updated 3 weeks ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 6 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 10 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆78Updated 2 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- A platform for compiling, analyzing, and exploring tracking data☆47Updated last week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆134Updated 5 years ago
- StarDist plugin for ImageJ☆31Updated 3 years ago
- SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification☆13Updated 2 weeks ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆147Updated last month
- ImageJ plugins to run ilastik workflows☆25Updated this week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆24Updated 3 months ago