segment-anything-models-java / SAMJ-IJLinks
An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
☆77Updated 2 months ago
Alternatives and similar repositories for SAMJ-IJ
Users that are interested in SAMJ-IJ are comparing it to the libraries listed below
Sorting:
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆81Updated 3 weeks ago
- ☆51Updated 5 months ago
- Course and exercises on deep learning for microscopy image analysis☆18Updated 3 months ago
- StarDist plugin for napari☆39Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 5 months ago
- Transformer-based cell tracking for live-cell microscopy☆94Updated last week
- Cell tracking and segmentation software☆147Updated this week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆29Updated 5 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆80Updated 6 months ago
- ☆85Updated 6 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆102Updated this week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆84Updated last week
- ☆12Updated 6 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆56Updated 11 months ago
- Accurate and efficient spot detection for microscopy data☆100Updated last week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆86Updated 3 weeks ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆38Updated 4 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆180Updated this week
- Guides and code for 3D nuclear instance segmentation☆22Updated 3 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆148Updated this week
- ☆20Updated 2 months ago
- Automated mitochondrial segmentation and tracking.☆32Updated 4 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Particle tracking by solving linear assignment problem.☆57Updated last week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Updated 2 years ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated last month