stardist / stardist-napariView external linksLinks
StarDist plugin for napari
☆38Aug 24, 2024Updated last year
Alternatives and similar repositories for stardist-napari
Users that are interested in stardist-napari are comparing it to the libraries listed below
Sorting:
- ilastik plugin for napari☆14Dec 15, 2025Updated 2 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆62Oct 27, 2024Updated last year
- ☆14Jan 25, 2024Updated 2 years ago
- ☆22Jun 27, 2025Updated 7 months ago
- ☆51May 1, 2025Updated 9 months ago
- A napari plugin to view and edit metadata☆13Feb 1, 2026Updated 2 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 9 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 9 months ago
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- Process images using SimpleITK in napari☆23May 1, 2025Updated 9 months ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 7 months ago
- Linking napari layers with Matplotlib plots☆43Feb 2, 2026Updated 2 weeks ago
- A self-supervised denoising algorithm.☆28Apr 6, 2024Updated last year
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Feb 4, 2026Updated 2 weeks ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- ☆38Dec 5, 2025Updated 2 months ago
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 4 months ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 2 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 2 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆19Feb 10, 2026Updated last week
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆18Nov 18, 2025Updated 2 months ago
- Multiple file format reading directly into napari using pure Python☆39Oct 15, 2025Updated 4 months ago
- A napari plugin for clustering objects according to their properties.☆90Feb 9, 2026Updated last week
- Segment images utilizing pre-trained neural networks as feature extractors☆47Jan 21, 2026Updated 3 weeks ago
- Cookiecutter for napari plugins☆71Nov 6, 2024Updated last year
- Particle tracking by solving linear assignment problem.☆62Feb 10, 2026Updated last week
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Apr 8, 2025Updated 10 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Nov 13, 2025Updated 3 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Jul 18, 2025Updated 6 months ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- ☆33May 2, 2025Updated 9 months ago
- Python libraries for loading, running and packaging bioimage.io models☆35Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 3, 2025Updated 5 months ago
- Web based Image Viewer developed @ Center for Advanced Imaging [University of Queensland]☆19May 18, 2023Updated 2 years ago
- ☆15Jan 20, 2026Updated 3 weeks ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year