Alternatives and similar repositories for plant-seg:

Users that are interested in plant-seg are comparing it to the libraries listed below

• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆139Updated this week
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 5 months ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆149Updated last week
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆114Updated last year
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆55Updated last month
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆75Updated 2 weeks ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆33Updated 2 years ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆133Updated last month
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆78Updated last year
• peng-lab / BaSiCPy
  ☆68Updated this week
• ilastik / ilastik4ij
  ImageJ plugins to run ilastik workflows
  ☆24Updated last month
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆106Updated last week
• vanvalenlab / deepcell-tracking
  Track cells and build cell lineages
  ☆33Updated 7 months ago
• DanuserLab / u-segment3D
  Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…
  ☆16Updated last week
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 4 months ago
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆133Updated 4 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆53Updated last month
• AllenCell / aics-ml-segmentation
  ☆31Updated 2 years ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 3 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 4 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆82Updated this week
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆50Updated 5 months ago
• instanseg / instanseg
  ☆150Updated 2 weeks ago
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆59Updated last year
• KristinaUlicna / DeepTree
  Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.
  ☆30Updated 4 years ago
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆144Updated 5 months ago
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆21Updated last year
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated last month
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆108Updated this week
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆28Updated 2 years ago