Alternatives and similar repositories for plant-seg:

Users that are interested in plant-seg are comparing it to the libraries listed below

• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆136Updated this week
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆112Updated last year
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆65Updated 4 months ago
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆27Updated 2 years ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆73Updated 2 weeks ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆145Updated this week
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆77Updated last year
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆51Updated 3 months ago
• peng-lab / BaSiCPy
  ☆68Updated 2 months ago
• instanseg / instanseg
  ☆139Updated 2 weeks ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆129Updated last week
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆54Updated 2 years ago
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆144Updated 3 months ago
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆50Updated 4 months ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆81Updated 7 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆82Updated last week
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆32Updated 2 years ago
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆107Updated this week
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 2 months ago
• AllenCell / aics-ml-segmentation
  ☆31Updated 2 years ago
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆67Updated 5 months ago
• vanvalenlab / deepcell-tracking
  Track cells and build cell lineages
  ☆32Updated 6 months ago
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆133Updated 4 years ago
• bioimage-io / bioimage.io
  Website for the BioImage Model zoo -- a model zoo for bioimage analysis.
  ☆58Updated this week
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆135Updated 2 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆37Updated 5 months ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated last year
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D time lapse images.
  ☆55Updated last month
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆63Updated 2 months ago