bunnech / cellotLinks
Learning Single-Cell Perturbation Responses using Neural Optimal Transport
☆137Updated 7 months ago
Alternatives and similar repositories for cellot
Users that are interested in cellot are comparing it to the libraries listed below
Sorting:
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆92Updated 2 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve …☆100Updated 9 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆113Updated 3 months ago
- ☆79Updated 9 months ago
- Models and datasets for perturbational single-cell omics☆154Updated 2 years ago
- ☆63Updated last year
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆70Updated 4 months ago
- Multi-omic single-cell optimal transport tools☆162Updated last week
- A model developed for the generation of scRNA-seq data☆64Updated 3 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆128Updated 3 months ago
- Learning cell communication from spatial graphs of cells☆110Updated last year
- A simulator for single-cell expression data guided by gene regulatory networks☆61Updated last year
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆85Updated last year
- Single-Cell (Perturbation) Model Library☆63Updated last week
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆25Updated 2 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆59Updated this week
- ☆32Updated 3 weeks ago
- Modeling complex perturbations with CellFlow☆44Updated last week
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆32Updated last month
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- Perturbation Analysis in the scverse ecosystem.☆177Updated this week
- spatial transcriptome, single cell☆68Updated 2 years ago
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆20Updated 7 months ago
- ☆126Updated 11 months ago
- ☆68Updated last week
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆192Updated last week
- single cell foundation model for Gene network inference and more☆81Updated this week
- ☆62Updated 9 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆34Updated last month
- Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data☆71Updated last year