Alternatives and similar repositories for cellot

Users that are interested in cellot are comparing it to the libraries listed below

• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆111Updated last year
• Genentech / sVAE
  ☆63Updated 2 years ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆87Updated last week
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆89Updated this week
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆164Updated 3 years ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆96Updated 6 months ago
• const-ae / linear_perturbation_prediction-Paper
  ☆54Updated 2 months ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆26Updated 2 months ago
• nitzanlab / biolord
  ☆84Updated last year
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆148Updated 7 months ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆124Updated 8 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆72Updated 7 months ago
• theislab / moscot
  Multi-omic single-cell optimal transport tools
  ☆174Updated 2 weeks ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆48Updated 2 months ago
• theislab / ncem
  Learning cell communication from spatial graphs of cells
  ☆113Updated last year
• theislab / prophet
  ☆35Updated last week
• kodaim1115 / scMM
  ☆18Updated 4 years ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆65Updated last year
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆73Updated last month
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆219Updated 7 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆97Updated last year
• siyuh / Squidiff
  ☆13Updated 6 months ago
• rsinghlab / SCOT
  Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data
  ☆76Updated last year
• HantaoShu / DeepSEM
  ☆85Updated 2 years ago
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆72Updated last week
• microsoft / zero-shot-scfoundation
  ☆72Updated last year
• snap-stanford / SATURN
  ☆139Updated last year
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆35Updated last year
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆18Updated 4 months ago