Learning Single-Cell Perturbation Responses using Neural Optimal Transport
☆176Oct 31, 2024Updated last year
Alternatives and similar repositories for cellot
Users that are interested in cellot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Supervised Training of Conditional Monge Maps☆19Oct 30, 2023Updated 2 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆177Feb 25, 2025Updated last year
- ☆11Dec 8, 2023Updated 2 years ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆368Feb 1, 2025Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell lev…☆185Sep 7, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- This is the alpha version of the CellOracle package☆462Apr 30, 2026Updated last month
- ☆39Apr 16, 2025Updated last year
- Proximal Optimal Transport Modeling of Population Dynamics (AISTATS 2022)☆24Jun 19, 2023Updated 2 years ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆154Feb 6, 2025Updated last year
- Single cell perturbation prediction☆350Dec 5, 2024Updated last year
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆37Jul 29, 2025Updated 10 months ago
- Models and datasets for perturbational single-cell omics☆178Aug 19, 2022Updated 3 years ago
- Single-cell perturbation analysis☆327Updated this week
- ☆34Oct 4, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆146Aug 14, 2024Updated last year
- ☆26Dec 25, 2023Updated 2 years ago
- Compendium of tools for the Imaging Platform☆16Updated this week
- TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics☆135Aug 19, 2024Updated last year
- Multi-omic single-cell optimal transport tools☆212Updated this week
- Reference mapping for single-cell genomics☆405Mar 21, 2026Updated 2 months ago
- Comprehensive suite for evaluating perturbation prediction models☆137Updated this week
- Deep probabilistic analysis of single-cell and spatial omics data☆1,638Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆26Jan 10, 2025Updated last year
- Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)☆18Jun 15, 2025Updated 11 months ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆65Jan 12, 2026Updated 5 months ago
- ☆58Mar 23, 2025Updated last year
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Apr 14, 2026Updated 2 months ago
- Modeling complex perturbations with CellFlow☆144Updated this week
- ☆98Aug 12, 2024Updated last year
- repository containing analysis scripts and auxiliary files☆39Apr 9, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Maximum mean discrepancy comparisons for single cell profiling experiments☆20Feb 9, 2022Updated 4 years ago
- Arc Virtual Cell Atlas☆537Updated this week
- Metacells - Single-cell RNA Sequencing Analysis☆125Apr 20, 2026Updated last month
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆592May 4, 2026Updated last month
- PhD Thesis☆36Oct 16, 2023Updated 2 years ago
- ☆1,578Apr 29, 2026Updated last month
- Benchmarking analysis of data integration tools☆423Apr 27, 2026Updated last month