usnistgov / lanternLinks
Interpretable genotype-phenotype landscape modeling
☆36Updated last year
Alternatives and similar repositories for lantern
Users that are interested in lantern are comparing it to the libraries listed below
Sorting:
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆35Updated 2 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- Diverse Genomic Embedding Benchmark☆48Updated 2 months ago
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 7 months ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Updated 2 years ago
- ☆20Updated 4 years ago
- Evolutionary velocity with protein language models☆94Updated 2 years ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆17Updated 3 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 6 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆76Updated 3 months ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- Protein Sequence Annotation with Language Models☆24Updated 5 months ago
- Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape☆11Updated 3 years ago
- ☆15Updated 9 years ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Comprehensive Python client for the Uniprot REST API☆52Updated last month
- ☆47Updated last year
- A route planner for DNA assembly☆36Updated 6 months ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- The Complete Python Antibody Library☆24Updated 2 weeks ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Fast and accurate protein structure prediction☆56Updated 10 months ago
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆45Updated 5 months ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- Template-based RNA secondary structure visualization☆26Updated last year