Interpretable genotype-phenotype landscape modeling
☆36Dec 3, 2023Updated 2 years ago
Alternatives and similar repositories for lantern
Users that are interested in lantern are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆38Aug 18, 2023Updated 3 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Aug 3, 2026Updated last month
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- ☆20Jul 16, 2021Updated 5 years ago
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆16Jun 7, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Rust wrapper for STAR aligner☆23Apr 13, 2026Updated 5 months ago
- Gene lists related to cancer immunotherapy☆15Sep 11, 2024Updated 2 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆53Aug 13, 2024Updated 2 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Neural network model for prediction of amino-acid sequence from a protein backbone structure☆25Mar 5, 2025Updated last year
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12May 25, 2022Updated 4 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆15Aug 6, 2026Updated last month
- Random Circuit Perturbation Method☆16Jun 29, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Data files of promoter and non-promoter sequences used to build CNN models☆13Dec 24, 2016Updated 9 years ago
- General low-level API☆51Jul 18, 2022Updated 4 years ago
- Implementation of "Generative Modeling for Protein Structures" by Namrata Anand and Po-Ssu Huang☆18Sep 8, 2021Updated 5 years ago
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆24Jan 27, 2022Updated 4 years ago
- Parallel Construction of Suffix Arrays in Rust☆26Updated this week
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Jul 20, 2021Updated 5 years ago
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆31May 11, 2026Updated 4 months ago
- **PLEASE NOTE: Due to lack of funding Leaf LIMS is no longer being developed/updated**. Set up Leaf LIMS on your own system.☆31May 22, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- ☆10Aug 29, 2012Updated 14 years ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆39Feb 17, 2022Updated 4 years ago
- Code for "Biological Sequence Design with GFlowNets", 2022☆78Mar 17, 2023Updated 3 years ago
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Software package for FEP☆24Aug 7, 2026Updated last month
- evaluating vcf parsing libraries☆19Mar 1, 2022Updated 4 years ago
- Tool for estimating growth rates from microbial growth curves☆32Feb 4, 2026Updated 7 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆45Sep 16, 2025Updated last year
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- Python tools for Morse Smale Complex analysis and visualization☆14Nov 10, 2021Updated 4 years ago
- A simple BLOSUM module for python3☆18Nov 21, 2025Updated 10 months ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆19Feb 8, 2024Updated 2 years ago
- ☆16May 19, 2024Updated 2 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago