Alternatives and similar repositories for lantern

Users that are interested in lantern are comparing it to the libraries listed below

• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆37Updated 2 years ago
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• Edinburgh-Genome-Foundry / Caravagene
  🎨 Python library to plot multi-part genetic constructs
  ☆25Updated 9 months ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 7 years ago
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆50Updated 4 months ago
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆66Updated 3 years ago
• eternagame / EternaBench
  Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.
  ☆17Updated 3 years ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆50Updated last year
• Edinburgh-Genome-Foundry / DnaWeaver
  A route planner for DNA assembly
  ☆36Updated 8 months ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆54Updated 3 months ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆37Updated 4 years ago
• allydunham / aa_subtypes
  Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
  ☆11Updated 3 years ago
• soedinglab / CCMgen
  ☆20Updated 4 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆95Updated last month
• konstin / knn-for-homology
  Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"
  ☆13Updated 2 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 2 weeks ago
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆57Updated last year
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆64Updated 8 months ago
• jwillis0720 / sadie
  The Complete Python Antibody Library
  ☆24Updated 2 months ago
• Edinburgh-Genome-Foundry / Plateo
  🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more
  ☆46Updated 7 months ago
• SBRG / MASSpy
  ☆26Updated 3 years ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆77Updated last month
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆10Updated 2 years ago
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆49Updated 6 months ago
• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆33Updated 3 years ago