Interpretable genotype-phenotype landscape modeling
☆36Dec 3, 2023Updated 2 years ago
Alternatives and similar repositories for lantern
Users that are interested in lantern are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆38Aug 18, 2023Updated 2 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Apr 28, 2026Updated 2 months ago
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- ☆20Jul 16, 2021Updated 4 years ago
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- protein embedding project☆12May 3, 2018Updated 8 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Neural network model for prediction of amino-acid sequence from a protein backbone structure☆25Mar 5, 2025Updated last year
- Implementation of the Pairformer model used in AlphaFold 3☆14Jun 22, 2026Updated last week
- Data files of promoter and non-promoter sequences used to build CNN models☆13Dec 24, 2016Updated 9 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12May 25, 2022Updated 4 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆15May 13, 2025Updated last year
- Random Circuit Perturbation Method☆16Jun 29, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R bindings to libpostal for fast international address parsing/normalization☆10Nov 29, 2016Updated 9 years ago
- General low-level API☆50Jul 18, 2022Updated 3 years ago
- Implementation of "Generative Modeling for Protein Structures" by Namrata Anand and Po-Ssu Huang☆18Sep 8, 2021Updated 4 years ago
- Metagenomics Pipeline Repository for January, 2015 NCBI/ADDS Hackathon at NIH☆10Oct 31, 2016Updated 9 years ago
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆23Jan 27, 2022Updated 4 years ago
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated last year
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- Converts a Charles Schwab transaction CSV file to a ready-to-import CSV file for Portfolio Performance.☆15Oct 30, 2025Updated 8 months ago
- ☆10Aug 29, 2012Updated 13 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- **PLEASE NOTE: Due to lack of funding Leaf LIMS is no longer being developed/updated**. Set up Leaf LIMS on your own system.☆31May 22, 2018Updated 8 years ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆37Feb 17, 2022Updated 4 years ago
- Graph convolutional neural networks for analyzing glycans [LEGACY; use glycowork implementation]☆19Mar 9, 2021Updated 5 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Software package for FEP☆23Mar 3, 2026Updated 4 months ago
- evaluating vcf parsing libraries☆19Mar 1, 2022Updated 4 years ago
- Code for "Biological Sequence Design with GFlowNets", 2022☆78Mar 17, 2023Updated 3 years ago
- Tool for estimating growth rates from microbial growth curves☆32Feb 4, 2026Updated 5 months ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆42Sep 16, 2025Updated 9 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆63Feb 3, 2026Updated 5 months ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Jul 20, 2021Updated 4 years ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆19Feb 8, 2024Updated 2 years ago
- A simple BLOSUM module for python3☆18Nov 21, 2025Updated 7 months ago
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- ☆14May 19, 2024Updated 2 years ago
- Code for holographic machine learning of proteins☆25Oct 29, 2024Updated last year