Alternatives and similar repositories for BioSeq-GFN-AL

Users that are interested in BioSeq-GFN-AL are comparing it to the libraries listed below

• Genentech / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆55Updated last year
• samuelstanton / lambo
  Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)
  ☆72Updated last year
• prescient-design / holo-bench
  Benchmark for Biophysical Sequence Optimization Algorithms
  ☆20Updated 6 months ago
• prescient-design / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆59Updated last year
• HeliXonProtein / proximal-exploration
  PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"
  ☆37Updated 2 years ago
• hnisonoff / discrete_guidance
  Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"
  ☆31Updated 7 months ago
• ngruver / NOS
  Protein Design with Guided Discrete Diffusion
  ☆138Updated last year
• instadeepai / protein-sequence-bfn
  Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
  ☆48Updated 9 months ago
• lucidrains / ddpm-ipa-protein-generation
  Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…
  ☆89Updated 3 years ago
• nataliemaus / lolbo
  ☆32Updated 3 years ago
• biolists / biodiffusion
  A list of manuscripts/tools using diffusion on biological enttieis
  ☆98Updated 2 years ago
• leojklarner / context-guided-diffusion
  Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design
  ☆39Updated last year
• jarridrb / DEM
  Code for the paper Iterated Denoising Energy Matching for Sampling from Boltzmann Densities.
  ☆67Updated 7 months ago
• Genentech / equifold
  Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
  ☆126Updated 2 years ago
• jasonkyuyim / multiflow
  ☆202Updated last year
• latkins / trifast
  ☆34Updated 7 months ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆40Updated last year
• prescient-design / cortex
  A Modular Architecture for Deep Learning Systems
  ☆49Updated 6 months ago
• plainerman / Variational-Doob
  Lagrangian formulation of Doob's h-transform allowing for efficient rare event sampling
  ☆54Updated 8 months ago
• senya-ashukha / simple-equivariant-gnn
  A short and easy PyTorch implementation of E(n) Equivariant Graph Neural Networks
  ☆139Updated 3 years ago
• EleutherAI / mp_nerf
  Massively-Parallel Natural Extension of Reference Frame
  ☆32Updated 2 years ago
• vgsatorras / en_flows
  ☆59Updated 3 years ago
• divelab / GraphBP
  Official implementation of "Generating 3D Molecules for Target Protein Binding" [ICML2022 Long Presentation]
  ☆109Updated 2 years ago
• microsoft / two-for-one-diffusion
  This Denoising Force Field (DFF) codebase provides a Pytorch framework for the method presented in Two for one: Diffusion models and forc…
  ☆66Updated last year
• rish-16 / rna-backbone-design
  Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design
  ☆84Updated last month
• drorlab / DIPS
  Database of Interacting Protein Structures (DIPS)
  ☆102Updated last year
• phermosilla / IEConv_proteins
  Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures
  ☆48Updated 3 years ago
• andrew-cr / discrete_flow_models
  Code for the paper https://arxiv.org/abs/2402.04997
  ☆99Updated last year
• HannesStark / dirichlet-flow-matching
  ☆126Updated last year
• NVlabs / protcomposer
  ☆50Updated 4 months ago