Alternatives and similar repositories for BioSeq-GFN-AL:

Users that are interested in BioSeq-GFN-AL are comparing it to the libraries listed below

• samuelstanton / lambo
  Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)
  ☆69Updated 11 months ago
• prescient-design / holo-bench
  Benchmark for Biophysical Sequence Optimization Algorithms
  ☆16Updated last week
• Genentech / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆52Updated last year
• prescient-design / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆52Updated 11 months ago
• HeliXonProtein / proximal-exploration
  PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"
  ☆36Updated last year
• leojklarner / context-guided-diffusion
  Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design
  ☆37Updated 9 months ago
• biolists / biodiffusion
  A list of manuscripts/tools using diffusion on biological enttieis
  ☆96Updated last year
• prescient-design / cortex
  A Modular Architecture for Deep Learning Systems
  ☆40Updated 3 weeks ago
• jasonkyuyim / multiflow
  ☆157Updated last year
• andrew-cr / discrete_flow_models
  Code for the paper https://arxiv.org/abs/2402.04997
  ☆77Updated last year
• ngruver / NOS
  Protein Design with Guided Discrete Diffusion
  ☆127Updated last year
• divelab / GraphBP
  Official implementation of "Generating 3D Molecules for Target Protein Binding" [ICML2022 Long Presentation]
  ☆108Updated last year
• igashov / RetroBridge
  RetroBridge: Markov Bridge Model for Retrosynthesis Planning
  ☆29Updated last year
• lucidrains / ddpm-ipa-protein-generation
  Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…
  ☆89Updated 2 years ago
• instadeepai / protein-sequence-bfn
  Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
  ☆41Updated 2 months ago
• mirunacrt / synflownet
  A GFlowNet with a chemical synthesis action space.
  ☆51Updated 3 months ago
• nataliemaus / lolbo
  ☆28Updated 2 years ago
• drorlab / DIPS
  Database of Interacting Protein Structures (DIPS)
  ☆99Updated last year
• HannesStark / FlowSite
  Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …
  ☆96Updated 9 months ago
• Dunni3 / FlowMol
  Mixed continous/categorical flow-matching model for de novo molecule generation.
  ☆102Updated last week
• microsoft / two-for-one-diffusion
  This Denoising Force Field (DFF) codebase provides a Pytorch framework for the method presented in Two for one: Diffusion models and forc…
  ☆60Updated 11 months ago
• shehzaidi / pre-training-via-denoising
  Official implementation of pre-training via denoising for TorchMD-NET
  ☆91Updated 2 years ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆38Updated 11 months ago
• Rose-STL-Lab / LIMO
  generative model for drug discovery
  ☆59Updated last year
• learningmatter-mit / GenZProt
  ☆27Updated last year
• cgoliver / rnaglib
  Deep learning datasets for RNA 3D and 2.5D structures.
  ☆34Updated this week
• jarridrb / DEM
  Code for the paper Iterated Denoising Energy Matching for Sampling from Boltzmann Densities.
  ☆51Updated 3 weeks ago
• phermosilla / IEConv_proteins
  Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures
  ☆47Updated 3 years ago
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆57Updated last year
• plainerman / Variational-Doob
  Lagrangian formulation of Doob's h-transform allowing for efficient rare event sampling
  ☆49Updated last month