Alternatives and similar repositories for BioSeq-GFN-AL

Users that are interested in BioSeq-GFN-AL are comparing it to the libraries listed below

• samuelstanton / lambo
  Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)
  ☆71Updated last year
• Genentech / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆54Updated last year
• prescient-design / holo-bench
  Benchmark for Biophysical Sequence Optimization Algorithms
  ☆20Updated 5 months ago
• prescient-design / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆59Updated last year
• hnisonoff / discrete_guidance
  Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"
  ☆30Updated 7 months ago
• leojklarner / context-guided-diffusion
  Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design
  ☆39Updated last year
• nataliemaus / lolbo
  ☆32Updated 3 years ago
• ngruver / NOS
  Protein Design with Guided Discrete Diffusion
  ☆137Updated last year
• HeliXonProtein / proximal-exploration
  PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"
  ☆37Updated 2 years ago
• biolists / biodiffusion
  A list of manuscripts/tools using diffusion on biological enttieis
  ☆97Updated 2 years ago
• lucidrains / ddpm-ipa-protein-generation
  Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…
  ☆89Updated 3 years ago
• divelab / GraphBP
  Official implementation of "Generating 3D Molecules for Target Protein Binding" [ICML2022 Long Presentation]
  ☆109Updated 2 years ago
• instadeepai / protein-sequence-bfn
  Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
  ☆47Updated 8 months ago
• Genentech / equifold
  Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
  ☆125Updated 2 years ago
• drorlab / DIPS
  Database of Interacting Protein Structures (DIPS)
  ☆102Updated last year
• plainerman / Variational-Doob
  Lagrangian formulation of Doob's h-transform allowing for efficient rare event sampling
  ☆52Updated 7 months ago
• BorgwardtLab / proteinshake
  Protein structure datasets for machine learning.
  ☆112Updated 6 months ago
• ml-jku / clamp
  Code for the paper Enhancing Activity Prediction Models in Drug Discovery with the Ability to Understand Human Language
  ☆105Updated last year
• aqlaboratory / insilico_design_pipeline
  In-silico design pipeline for evaluating protein structure diffusion models.
  ☆27Updated last year
• senya-ashukha / simple-equivariant-gnn
  A short and easy PyTorch implementation of E(n) Equivariant Graph Neural Networks
  ☆139Updated 3 years ago
• wenhao-gao / mol_opt
  ☆224Updated last year
• jasonkyuyim / multiflow
  ☆201Updated last year
• NVlabs / protcomposer
  ☆49Updated 3 months ago
• pascalnotin / uncertainty_guided_optimization
  Official repository for the paper "Improving black-box optimization in VAE latent space using decoder uncertainty" (Pascal Notin, José Mi…
  ☆30Updated 2 years ago
• microsoft / two-for-one-diffusion
  This Denoising Force Field (DFF) codebase provides a Pytorch framework for the method presented in Two for one: Diffusion models and forc…
  ☆66Updated last year
• phermosilla / IEConv_proteins
  Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures
  ☆48Updated 3 years ago
• insilicomedicine / fcd_torch
  Fréchet ChemNet Distance on PyTorch
  ☆53Updated 6 years ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆39Updated last year
• DeepGraphLearning / PEER_Benchmark
  PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
  ☆98Updated 2 years ago
• prescient-design / cortex
  A Modular Architecture for Deep Learning Systems
  ☆47Updated 5 months ago