Ancestral protein sequence reconstruction using a tree-structured Ornstein-Uhlenbeck variational autoencoder
☆18Aug 3, 2026Updated 3 months ago
Alternatives and similar repositories for DRAUPNIR_ASR
Users that are interested in DRAUPNIR_ASR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ancestral sequence reconstruction with gap-state inference using IQ-TREE☆16Updated this week
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated 2 years ago
- ☆12Aug 13, 2024Updated 2 years ago
- Project Page of ShortListing Model☆13Sep 30, 2025Updated last year
- VAE for protein interpretation and design☆12Jul 5, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for holographic machine learning of proteins☆25Oct 29, 2024Updated 2 years ago
- ☆61Nov 21, 2022Updated 3 years ago
- ☆13Jun 7, 2025Updated last year
- ☆10Aug 15, 2024Updated 2 years ago
- ☆12Oct 7, 2024Updated 2 years ago
- CAMUS (Constrained Algorithm Maximizing qUartetS) is a dynamic programming algorithm for inferring level-1 phylogenetic networks from qua…☆11Oct 8, 2026Updated last month
- An OpenMM plugin for slicing nonbonded interactions based on particle subsets☆13Nov 2, 2026Updated last week
- Tool repository for CAR-PNN☆14Oct 7, 2026Updated last month
- MSEABOARD: A web-based dashboard for interactive visualization and analysis of multiple sequence alignments, phylogenetic trees, protein …☆11Jun 9, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆15Jul 14, 2025Updated last year
- ☆22Jul 14, 2023Updated 3 years ago
- Visualizing the latent space of generative models (VAE and BiGAN implemented here), as in latent vectors of testing images over the induc…☆18Apr 24, 2021Updated 5 years ago
- ☆34May 31, 2019Updated 7 years ago
- Python framework for doing ancestral sequence reconstruction☆45Sep 7, 2026Updated 2 months ago
- OpenMM plugin to interface with XTB☆21Nov 5, 2025Updated last year
- Autoregressive networks for protein☆39Feb 27, 2025Updated last year
- mmCIF-based extension dictionary for computed structure models☆24Feb 5, 2026Updated 9 months ago
- Official code accompanying the arXiv paper Compressing Multisets with Large Alphabets☆30Sep 22, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- diffusion model for protein sequence generation☆51Feb 18, 2023Updated 3 years ago
- ☆14Jul 11, 2026Updated 3 months ago
- Implementations of the renormalization group-based diffusion model (RGDM).☆15Aug 16, 2026Updated 2 months ago
- ☆13Feb 21, 2021Updated 5 years ago
- Building a DCA Frustratometer from scratch. Ultimately we aim to compare frustrated sites according to the DCA and AWSEM Frustratometers.☆17Jan 8, 2026Updated 10 months ago
- A book for my course☆28Sep 4, 2026Updated 2 months ago
- Quarto source files for robjhyndman.com☆22Updated this week
- ☆12Mar 12, 2026Updated 7 months ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆40Jul 25, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- From Theory to Therapy: Reframing SBDD Model Evaluation via Practical Metrics☆10Jun 13, 2024Updated 2 years ago
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 3 years ago
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆24Jan 27, 2022Updated 4 years ago
- ICML23 "Latent Traversals in Generative Models as Potential Flows"☆28Oct 23, 2023Updated 3 years ago
- Bridging Smoothed Molecular Dynamics and Score-Based Learning for Conformational Ensembles☆23May 16, 2026Updated 5 months ago
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- Protein representation and design under a single training scheme☆25May 17, 2026Updated 5 months ago
Are these results useful?