Ancestral protein sequence reconstruction using a tree-structured Ornstein-Uhlenbeck variational autoencoder
☆18Aug 3, 2026Updated last month
Alternatives and similar repositories for DRAUPNIR_ASR
Users that are interested in DRAUPNIR_ASR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated 2 years ago
- ☆12Aug 13, 2024Updated 2 years ago
- Ancestral sequence reconstruction with gap-state inference using IQ-TREE☆15Jul 26, 2026Updated last month
- Code for holographic machine learning of proteins☆25Oct 29, 2024Updated last year
- ☆61Nov 21, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆22Jul 14, 2023Updated 3 years ago
- Python framework for doing ancestral sequence reconstruction☆45Updated this week
- OpenMM plugin to interface with XTB☆20Nov 5, 2025Updated 10 months ago
- ☆15Jul 14, 2025Updated last year
- mmCIF-based extension dictionary for computed structure models☆24Feb 5, 2026Updated 7 months ago
- ☆34May 31, 2019Updated 7 years ago
- ☆16Jun 22, 2026Updated 2 months ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆33Jan 17, 2023Updated 3 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆40Jul 25, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Graphical Representation of Ancestral Sequence Predictions☆14Mar 6, 2023Updated 3 years ago
- ☆14Jul 11, 2026Updated last month
- 🔗 PyTorch implementation of the Parallelized Natural Extension Reference Frame algorithm☆21Sep 8, 2018Updated 8 years ago
- diffusion model for protein sequence generation☆51Feb 18, 2023Updated 3 years ago
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆24Jan 27, 2022Updated 4 years ago
- A book for my course☆27Updated this week
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 3 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 6 months ago
- Building a DCA Frustratometer from scratch. Ultimately we aim to compare frustrated sites according to the DCA and AWSEM Frustratometers.☆16Jan 8, 2026Updated 8 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A deep learning-based predictor of enzyme optimal pH☆12Jun 25, 2025Updated last year
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- Implementations of the renormalization group-based diffusion model (RGDM).☆15Aug 16, 2026Updated 3 weeks ago
- ☆27Aug 25, 2023Updated 3 years ago
- Tools to build coarse grained models and perform simulations with OpenMM☆24Aug 12, 2026Updated 3 weeks ago
- Protein representation and design under a single training scheme☆24May 17, 2026Updated 3 months ago
- This repo is for reproducing our results in “Activation Maximization Generative Adversarial Nets”.☆11Sep 26, 2020Updated 5 years ago
- Protein Structure Archiver☆15Sep 10, 2025Updated 11 months ago
- Practically and asymptotically accurate conditional sampling from diffusion generative models without conditional training☆50Nov 24, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DomainMapper is a parser for hmmscan full output files built centrally around ECOD domain definitions. Users can optimize DomainMapper's …☆13Dec 13, 2023Updated 2 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- Official code for Generative Marginalization Models [ICML 2024] [SPGIM 2023 Workshop Oral]☆23Aug 19, 2024Updated 2 years ago
- Deciphering protein evolution and fitness landscapes with latent space models☆38Nov 2, 2021Updated 4 years ago
- Autoregressive networks for protein☆38Feb 27, 2025Updated last year
- Scripts for building computational models of gene regulation with tensorflow☆12Jan 21, 2020Updated 6 years ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year