LysSanzMoreta / DRAUPNIR_ASRLinks
Ancestral protein sequence reconstruction using a tree-structured Ornstein-Uhlenbeck variational autoencoder
☆14Updated 5 months ago
Alternatives and similar repositories for DRAUPNIR_ASR
Users that are interested in DRAUPNIR_ASR are comparing it to the libraries listed below
Sorting:
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆29Updated 2 years ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆34Updated 3 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆37Updated 2 years ago
- ML toolset for creating TED: The Encyclopedia of Domains☆21Updated last month
- Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"☆20Updated 2 months ago
- We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…☆20Updated last year
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆12Updated last month
- ☆14Updated this week
- PLM-interact: extending protein language models to predict protein-protein interactions.☆25Updated 3 weeks ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆17Updated last year
- Protein Structure Archiver☆12Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- ☆35Updated 6 months ago
- ☆31Updated 4 years ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆24Updated last year
- ☆22Updated last month
- protein structure generation with sparse all-atom denoising models☆34Updated last month
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆26Updated last year
- ☆13Updated 2 weeks ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated 11 months ago
- Autoregressive networks for protein☆38Updated 4 months ago
- Fast and accurate protein structure prediction☆53Updated 6 months ago
- protein backbone refinement☆15Updated 10 months ago
- Rank binders by structure modeling☆16Updated 4 months ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Updated 2 years ago
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Updated last year
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- ☆30Updated last year
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆29Updated 10 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆40Updated last year