LysSanzMoreta / DRAUPNIR_ASRLinks
Ancestral protein sequence reconstruction using a tree-structured Ornstein-Uhlenbeck variational autoencoder
☆18Updated last week
Alternatives and similar repositories for DRAUPNIR_ASR
Users that are interested in DRAUPNIR_ASR are comparing it to the libraries listed below
Sorting:
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆32Updated 3 years ago
- Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"☆22Updated 8 months ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated last year
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆18Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated 2 years ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆35Updated 3 years ago
- ☆36Updated last year
- ☆28Updated 2 months ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆13Updated last month
- PLM-interact: extending protein language models to predict protein-protein interactions.☆58Updated 5 months ago
- protein backbone refinement☆15Updated last year
- Transfer learning for Mutation Effect Prediction☆17Updated last year
- ☆15Updated 6 months ago
- Code for holographic machine learning of proteins☆24Updated last year
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆27Updated 2 years ago
- ☆23Updated 2 months ago
- dMaSIF implementation for google colab☆36Updated 2 years ago
- Fast and accurate protein structure prediction☆57Updated last year
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 7 years ago
- Differentiable Pairing using Alignment-based Language Models☆24Updated 2 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Ultra-fast in-silico structure mutation☆36Updated 9 months ago
- ☆17Updated 2 years ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆27Updated 2 years ago
- We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…☆20Updated 2 years ago
- Protein representation and design under a single training scheme☆24Updated last month
- ☆33Updated last year
- ☆32Updated 4 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆39Updated 5 months ago