collinarnett / protein_gan
Implementation of "Generative Modeling for Protein Structures" by Namrata Anand and Po-Ssu Huang
☆19Updated 3 years ago
Alternatives and similar repositories for protein_gan:
Users that are interested in protein_gan are comparing it to the libraries listed below
- Code for our paper "Protein sequence design with a learned potential"☆80Updated last year
- ☆56Updated 2 years ago
- ☆108Updated 3 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆85Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Updated 3 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated 11 months ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Updated 2 years ago
- Database of Interacting Protein Structures (DIPS)☆98Updated last year
- ☆30Updated 4 years ago
- ☆35Updated 2 years ago
- ☆24Updated 3 years ago
- Massively-Parallel Natural Extension of Reference Frame☆31Updated 2 years ago
- A geometric deep learning pipeline for predicting protein interface contacts. (ICLR 2022)☆63Updated 2 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆35Updated 3 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆34Updated 4 years ago
- PaccMann models for protein language modeling☆42Updated 3 years ago
- ☆55Updated 5 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆57Updated 3 years ago
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆37Updated 4 years ago
- Mono-repo for protein utilities.☆18Updated 3 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- Evolutionary velocity with protein language models☆90Updated last year
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆48Updated last year
- Protein Design by Machine Learning guided Directed Evolution☆35Updated last week
- RNA Multiple Sequence Alignment☆38Updated last year
- ☆36Updated 2 months ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆37Updated last year
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆80Updated 3 years ago
- Open source code for AlphaFold to extract protein embeddings☆26Updated 3 years ago