johli / seqpropLinks
Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
☆50Updated last year
Alternatives and similar repositories for seqprop
Users that are interested in seqprop are comparing it to the libraries listed below
Sorting:
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆55Updated 6 years ago
- Evolutionary velocity with protein language models☆94Updated 3 weeks ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- ☆85Updated 2 years ago
- Diverse Genomic Embedding Benchmark☆50Updated 3 months ago
- Draw RNA secondary structures in python.☆49Updated 6 months ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆23Updated last year
- Species-aware DNA language modeling☆18Updated 2 years ago
- Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences☆31Updated 4 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Fully convolutional deep learning variant effect predictor architecture☆23Updated last year
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆50Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆58Updated 2 weeks ago
- Python package and command line tool for epitope prediction☆52Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 5 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆32Updated 2 years ago
- HLA-I ligand predictor☆43Updated 3 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆84Updated last year
- ☆49Updated last year
- HLA-II ligand predictor.☆45Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- Evolutionary conservation estimation of residues or nucleotides☆56Updated 3 years ago
- Comprehensive Python client for the Uniprot REST API☆54Updated 2 months ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Updated 3 weeks ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 3 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 9 years ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago