carlobaldassi / GaussDCA.jlView external linksLinks
Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module
☆22Jan 27, 2022Updated 4 years ago
Alternatives and similar repositories for GaussDCA.jl
Users that are interested in GaussDCA.jl are comparing it to the libraries listed below
Sorting:
- Pseudo Likelihood Maximization for protein in Julia☆51May 15, 2025Updated 9 months ago
- Faster, more accurate and entirely open source method for predicting contacts in proteins☆12May 21, 2018Updated 7 years ago
- The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.☆12Jun 13, 2017Updated 8 years ago
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 7 years ago
- The matching routine for interologs identification based on co-evolution☆11Jul 17, 2018Updated 7 years ago
- Boltzmann machine learning for Potts models of biological data☆12Jul 24, 2024Updated last year
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Aug 5, 2021Updated 4 years ago
- pdbTool: An object-oriented Julia tool to parse PDB files and work with them☆16Jan 24, 2021Updated 5 years ago
- Library that handles atom structures as XYZ files and properties derived from it.☆18Aug 5, 2025Updated 6 months ago
- ☆10Mar 2, 2025Updated 11 months ago
- ☆12Jan 27, 2025Updated last year
- A Gene Finder framework for Julia.☆16Jan 16, 2026Updated last month
- ☆31Aug 16, 2021Updated 4 years ago
- DeepContact Software☆26Jun 16, 2018Updated 7 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Mar 25, 2019Updated 6 years ago
- Symmetric matrix as a list of the values in its upper or lower triangular part. Useful for representing pairwise measures or comparisons …☆19Sep 14, 2023Updated 2 years ago
- chemical identifiers (CAS, PubChemID, SMILES,InChI, InChI keys, names) from text search☆21Nov 23, 2024Updated last year
- Official implementation of the paper "SAINT"☆17Mar 12, 2022Updated 3 years ago
- ☆10Sep 17, 2024Updated last year
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36May 30, 2021Updated 4 years ago
- Utilities to programmatically query the PubChem database☆28Sep 9, 2025Updated 5 months ago
- ☆25May 9, 2022Updated 3 years ago
- Experiments in protein folding through language modeling☆10Dec 10, 2021Updated 4 years ago
- ☆12Jun 29, 2018Updated 7 years ago
- Use Thor's Axe to cut exons into their evolutionary building blocks☆12Feb 3, 2026Updated last week
- Graph-building for AtomicGraphNets☆12Nov 20, 2023Updated 2 years ago
- A flexible data structure for multi-input multi-output models☆10Oct 12, 2021Updated 4 years ago
- ☆29Jul 10, 2020Updated 5 years ago
- HiCOPS: Computational framework for peptide identification from MS data through accelerated database search☆10Mar 24, 2023Updated 2 years ago
- ChainRules.jl integration for Unitful.jl☆13Aug 9, 2022Updated 3 years ago
- Framework for stochastic modelling in systems biology☆12Aug 11, 2022Updated 3 years ago
- Evolutionary Individual based modelling, mathematically grounded.☆13Mar 25, 2022Updated 3 years ago
- Notebook tutorials for MolecularGraph.jl☆11Jun 22, 2025Updated 7 months ago
- Julia tools for reading Crystallographic Information Framework (CIF) files and dictionaries☆15Feb 2, 2026Updated 2 weeks ago
- Utilities to read/write FASTA format files in Julia☆16Aug 30, 2024Updated last year
- Normal Mode Analysis for Macromolecules☆18Apr 1, 2017Updated 8 years ago
- Biological file format specimens for testing packages, and functions to assist in testing.☆15Nov 18, 2025Updated 2 months ago
- A Christmas tree protein☆19Dec 27, 2024Updated last year
- Direct coupling analysis software for protein and RNA sequences☆58Jul 21, 2025Updated 6 months ago