Alternatives and similar repositories for CoVES

Users that are interested in CoVES are comparing it to the libraries listed below

• deskk / AbGPT
  ☆11Updated last year
• csi-greifflab / developability_profiling
  ☆26Updated 2 months ago
• deeprob / pssmpro
  A python tool for numerically encoding protein sequences based on PSSM profile
  ☆13Updated 4 years ago
• IBM / ReprogBERT
  Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"
  ☆24Updated 2 months ago
• jsunn-y / DeCOIL
  A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library
  ☆14Updated 9 months ago
• Doudna-lab / GARNET_DL
  ☆36Updated 10 months ago
• gozsari / ProtFeat
  ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.
  ☆20Updated last year
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆23Updated last year
• liudan111 / PLM-interact
  PLM-interact: extending protein language models to predict protein-protein interactions.
  ☆47Updated 2 months ago
• Lailabcode / DeepViscosity
  DeepViscosity is a deep learning ANN model developed to predict high concentrated monoclonal antibody viscosity classes (Low <= 20cps, Hi…
  ☆18Updated 3 months ago
• navid-naderi / PLM_SWE
  Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"
  ☆22Updated 6 months ago
• Shen-Lab / CPAC
  [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction
  ☆16Updated last year
• alicetinglab / ConformationalBiasing
  Code for designing biased protein states
  ☆15Updated 3 weeks ago
• AlanNawzadAmin / CloneBO
  ☆15Updated 4 months ago
• IBM / Hestia-GOOD
  Independent evaluation set construction for trustworthy ML models in biochemistry
  ☆16Updated this week
• brineylab / BALM-paper
  ☆17Updated 10 months ago
• KrishnaswamyLab / ImmunoStruct
  ImmunoStruct: a multimodal neural network framework for immunogenicity prediction from peptide-MHC sequence, structure, and biochemical p…
  ☆12Updated 2 weeks ago
• StatPhysBio / protein_holography
  Code for holographic machine learning of proteins
  ☆24Updated last year
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆31Updated last year
• Marco-Peg / GEP
  ☆15Updated last year
• mgreenig / IgCraft
  Versatile human antibody sequence design
  ☆20Updated 5 months ago
• lehner-lab / domainome
  ☆15Updated 11 months ago
• barricklab-at-jhu / SVD-of-MSAs
  This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…
  ☆11Updated last year
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• KrishnaswamyLab / ProtSCAPE
  ☆19Updated last year
• GradinaruLab / APPRAISE
  Rank binders by structure modeling
  ☆16Updated 8 months ago
• oxpig / ANARCII
  A language model suite for numbering antigen receptor sequences.
  ☆31Updated 2 weeks ago
• WangLabforComputationalBiology / NanoBERTa-ASP
  Predicting Nanobody Binding Epitopes Based on a Pretrained RoBERTa-based Model
  ☆15Updated last year
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆34Updated 2 years ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆25Updated last year