ddingding / CoVESLinks
Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)
☆11Updated last year
Alternatives and similar repositories for CoVES
Users that are interested in CoVES are comparing it to the libraries listed below
Sorting:
- ☆23Updated 7 months ago
- ☆11Updated 11 months ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Updated 2 years ago
- ☆15Updated last year
- DeepViscosity is a deep learning ANN model developed to predict high concentrated monoclonal antibody viscosity classes (Low <= 20cps, Hi…☆14Updated 2 weeks ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated last year
- A python tool for numerically encoding protein sequences based on PSSM profile☆13Updated 4 years ago
- ☆14Updated last month
- Code for designing biased protein states☆14Updated last month
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated last year
- [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction☆16Updated last year
- Code for holographic machine learning of proteins☆24Updated 9 months ago
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆14Updated 5 months ago
- TUnA: Transformer-based Uncertainty Aware model for PPI Prediction☆10Updated last year
- Rank binders by structure modeling☆16Updated 5 months ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆28Updated last week
- Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"☆20Updated 3 months ago
- ☆15Updated 8 months ago
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆20Updated last year
- ☆25Updated 2 years ago
- Predicting Nanobody Binding Epitopes Based on a Pretrained RoBERTa-based Model☆15Updated last year
- ☆36Updated 6 months ago
- ☆36Updated last year
- Versatile human antibody sequence design☆18Updated 2 months ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆17Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆34Updated last year
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆30Updated last year
- An antibody-specific language model focusing on NGL prediction☆30Updated 11 months ago
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Updated 10 months ago
- Fragment binding prediction with ColabFold☆35Updated 4 months ago