ddingding / CoVESLinks
Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)
☆11Updated last year
Alternatives and similar repositories for CoVES
Users that are interested in CoVES are comparing it to the libraries listed below
Sorting:
- ☆21Updated 5 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 10 months ago
- ☆17Updated 5 months ago
- ☆14Updated last year
- An antibody-specific language model focusing on NGL prediction☆27Updated 9 months ago
- ☆37Updated 4 months ago
- ☆16Updated last month
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆20Updated 9 months ago
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆14Updated 3 months ago
- ☆11Updated 9 months ago
- dMaSIF implementation for google colab☆32Updated 2 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆19Updated last year
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆27Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆40Updated last month
- Code for designing biased protein states☆12Updated 3 weeks ago
- Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"☆18Updated last month
- ☆15Updated last year
- Ultra-fast in-silico structure mutation☆33Updated last month
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆36Updated this week
- Versatile human antibody sequence design☆15Updated last week
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated 9 months ago
- ☆24Updated 3 years ago
- ☆40Updated 4 months ago
- Predicting Nanobody Binding Epitopes Based on a Pretrained RoBERTa-based Model☆15Updated last year
- ☆35Updated 8 months ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆37Updated last year
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- Public version for Distance-AF☆22Updated last year
- Geometry-aware protein binding site predictor☆21Updated 9 months ago
- Rank binders by structure modeling☆15Updated 2 months ago