harmslab / epistasisLinks
A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
☆35Updated 2 years ago
Alternatives and similar repositories for epistasis
Users that are interested in epistasis are comparing it to the libraries listed below
Sorting:
- bioinformatics visualization tools with pyviz/bokeh☆20Updated 2 years ago
- ☆15Updated 9 years ago
- Pandas DataFrames for phylogenetics☆74Updated 4 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- Python interface to amino acid properties and IEDB☆57Updated last year
- Interpretable genotype-phenotype landscape modeling☆36Updated last year
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- A python wrapper for the benchling api☆50Updated 5 years ago
- Python package to query and analyse UniProt☆25Updated 5 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- A Python API for managing genotype-phenotype map data☆12Updated 2 years ago
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆28Updated 3 years ago
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Updated 7 months ago
- Find common blocks and differences between DNA sequences☆42Updated 2 weeks ago
- Python package to plot sequence logos☆29Updated 2 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 8 months ago
- SARS-CoV-2 RBD antibody escape calculator☆12Updated last year
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Updated 3 years ago
- A platform to do RNA science☆27Updated 4 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Updated 8 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- Pyro models of SARS-CoV-2 variants☆77Updated last year
- ☆23Updated 5 years ago
- Align sequences and then parse features.☆17Updated 3 weeks ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 6 months ago
- Proteins as words, genomes as documents.☆19Updated 5 years ago
- A route planner for DNA assembly☆36Updated 6 months ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Updated 2 years ago