Alternatives and similar repositories for epistasis:

Users that are interested in epistasis are comparing it to the libraries listed below

• harmslab / gpmap
  A Python API for managing genotype-phenotype map data
  ☆11Updated last year
• saketkc / pyseqlogo
  Python package to plot sequence logos
  ☆29Updated last year
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• jbloomlab / dmslogo
  draw sequence logos tailored to deep mutational scanning (DMS) data
  ☆12Updated last year
• jbkinney / mavenn
  MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect
  ☆25Updated this week
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆59Updated 4 years ago
• dmnfarrell / pybioviz
  bioinformatics visualization tools with pyviz/bokeh
  ☆20Updated last year
• Edinburgh-Genome-Foundry / Geneblocks
  Find common blocks and differences between DNA sequences
  ☆41Updated 2 years ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆23Updated 2 weeks ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆35Updated 3 years ago
• jbloomlab / alignparse
  Align sequences and then parse features.
  ☆17Updated 6 months ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆56Updated 5 months ago
• SBRG / Protein_ML
  Machine learning workflows for analyzing high-throughput protein data
  ☆25Updated 8 years ago
• gwh120104 / deepmetabolism
  DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing
  ☆31Updated 7 years ago
• widdowquinn / 2018-03-06-ibioic
  Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.
  ☆20Updated 7 years ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 2 years ago
• jbloomlab / SARS2-RBD-escape-calc
  SARS-CoV-2 RBD antibody escape calculator
  ☆11Updated 4 months ago
• usnistgov / lantern
  Interpretable genotype-phenotype landscape modeling
  ☆35Updated last year
• Edinburgh-Genome-Foundry / genome_collector
  Easily download genomes and build BLAST/Bowtie indexes in Python
  ☆21Updated 2 years ago
• soedinglab / MMseqs
  ☆14Updated 8 years ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆38Updated 8 months ago
• wilkelab / ProteinEvolutionToolbox
  ☆14Updated 8 years ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆30Updated 3 months ago
• cebel / pyuniprot
  Python package to query and analyse UniProt
  ☆25Updated 4 years ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆39Updated 2 months ago
• Edinburgh-Genome-Foundry / codon-usage-tables
  Codon usage tables in code-friendly format + Python bindings
  ☆35Updated last month
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆28Updated last year
• Ad115 / EnsemblRest
  A Python interface to the Ensembl REST APIs, biological data at your fingertips.
  ☆11Updated 11 months ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated last year
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆42Updated 3 weeks ago