harmslab / epistasisLinks
A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
☆37Updated 2 years ago
Alternatives and similar repositories for epistasis
Users that are interested in epistasis are comparing it to the libraries listed below
Sorting:
- bioinformatics visualization tools with pyviz/bokeh☆20Updated 2 years ago
- Python interface to amino acid properties and IEDB☆57Updated last year
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 2 weeks ago
- Pandas DataFrames for phylogenetics☆74Updated 4 years ago
- Interpretable genotype-phenotype landscape modeling☆36Updated 2 years ago
- Python package to query and analyse UniProt☆25Updated 5 years ago
- ☆15Updated 9 years ago
- A python wrapper for the benchling api☆50Updated 5 years ago
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Updated 2 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆28Updated last month
- A Python interface to the Ensembl REST APIs, biological data at your fingertips.☆11Updated last year
- A Python API for managing genotype-phenotype map data☆12Updated 2 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- Python package to plot sequence logos☆29Updated 2 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- ☆23Updated 5 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Updated 8 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 6 years ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Updated 2 years ago
- Tool for deep mutational scanning experiments.☆56Updated 10 months ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- A high-fidelity E. coli RNA-seq compendium☆33Updated 4 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- Python library to simulate evolutionary sequence data☆80Updated 4 years ago
- FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…☆14Updated 3 months ago
- A Python package for mapping sequence aligned data onto protein structures☆37Updated 4 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Updated 3 years ago
- Align sequences and then parse features.☆17Updated 2 months ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 9 years ago