Alternatives and similar repositories for CNNPromoterData

Users that are interested in CNNPromoterData are comparing it to the libraries listed below

• usnistgov / lantern
  Interpretable genotype-phenotype landscape modeling
  ☆36Updated 2 years ago
• allydunham / aa_subtypes
  Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
  ☆11Updated 3 years ago
• maxwshen / be_predict_bystander
  Deep conditional autoregressive models for genome editing sequence-to-sequence problems
  ☆10Updated 4 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated last week
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• JBEI / KineticLearning
  Learning Kinetic Models from Time Series Proteomics and Metabolomics Data
  ☆30Updated 3 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 7 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆56Updated 6 years ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆37Updated 2 years ago
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆49Updated 6 months ago
• daquang / YAMDA
  Yet Another Motif Discovery Algorithm
  ☆53Updated 7 years ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆57Updated last year
• broadinstitute / pyro-cov
  Pyro models of SARS-CoV-2 variants
  ☆77Updated last year
• cusbg / traveler
  Template-based RNA secondary structure visualization
  ☆26Updated last year
• saketkc / pyseqlogo
  Python package to plot sequence logos
  ☆29Updated 2 years ago
• mPloenzke / learnMotifs
  ☆12Updated 7 years ago
• soedinglab / CCMgen
  ☆20Updated 4 years ago
• kundajelab / simdna
  A python library for creating simulated regulatory DNA sequences
  ☆39Updated 2 years ago
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 7 years ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆56Updated 10 months ago
• wilkelab / ProteinEvolutionToolbox
  ☆15Updated 9 years ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆43Updated 6 months ago
• gwh120104 / deepmetabolism
  DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing
  ☆32Updated 8 years ago
• nfusi / qvalue
  Converts p-values in q-values, see (Storey and Tibshirani, 2003)
  ☆29Updated 8 years ago
• Alexamk / decRiPPter
  Genome mining tool for novel RiPP BGCs
  ☆16Updated 2 years ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆99Updated last year
• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆28Updated 3 years ago
• latendre / PythonCyc
  ☆23Updated 5 years ago
• quantumbrake / cayenne
  Python package for stochastic simulations
  ☆18Updated this week
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆50Updated 4 months ago