Official repository for discrete Walk-Jump Sampling (dWJS)
☆57Dec 17, 2023Updated 2 years ago
Alternatives and similar repositories for walk-jump
Users that are interested in walk-jump are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein Design with Guided Discrete Diffusion☆141Feb 21, 2024Updated 2 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆59Jun 3, 2024Updated last year
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated last month
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆281Dec 10, 2024Updated last year
- Building more accurate protein structures from backbone torsion angles☆15Mar 21, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆136Aug 8, 2024Updated last year
- Public Release of ProGen3 family of Models☆105Jul 21, 2025Updated 8 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- Protein Engineering via Exploration of an Energy Landscape☆133Mar 10, 2026Updated last month
- ☆32Nov 23, 2025Updated 4 months ago
- Code for RL-DIF☆16Jun 24, 2025Updated 9 months ago
- Protein stability prediction using rewired protein generative models☆71Dec 25, 2025Updated 3 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆166Aug 24, 2023Updated 2 years ago
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for "Biological Sequence Design with GFlowNets", 2022☆78Mar 17, 2023Updated 3 years ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆418Jul 3, 2023Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 5 months ago
- ☆257Jul 31, 2024Updated last year
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆160Updated this week
- Derivative-Free Guidance in Diffusion Models with Soft Value-Based Decoding. For controlled generation in DNA, RNA, proteins, molecules (…☆38Jan 7, 2026Updated 3 months ago
- Inference code for Bio-Inspired Antibody Language Model☆26Aug 26, 2024Updated last year
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆12Dec 10, 2024Updated last year
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆129Jan 8, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆214Sep 24, 2024Updated last year
- protein backbone refinement☆15Sep 12, 2024Updated last year
- ☆11Aug 26, 2024Updated last year
- Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)☆76May 19, 2024Updated last year
- Template-based protein design with Raygun☆79Mar 28, 2026Updated 2 weeks ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆60May 6, 2024Updated last year
- A standard library for biological research.☆34Sep 2, 2025Updated 7 months ago
- Flow-matching for coarse graining of miniproteins.☆20Nov 18, 2022Updated 3 years ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆37Nov 7, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for "Discovering Non-monotonic Autoregressive Orderings with Variational Inference" (paper and code updated from ICLR 2021)☆12Mar 7, 2024Updated 2 years ago
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆37Dec 12, 2024Updated last year
- Machine learning-driven antibody design☆63Jul 5, 2023Updated 2 years ago
- Neurally-derived Potts models for protein design, inspired by dTERMen☆14Aug 23, 2022Updated 3 years ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆105Jul 30, 2024Updated last year
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆681Feb 27, 2026Updated last month
- Fast protein backbone generation with SE(3) flow matching.☆322Jul 19, 2024Updated last year