Genentech / walk-jump
Official repository for discrete Walk-Jump Sampling (dWJS)
☆52Updated last year
Alternatives and similar repositories for walk-jump:
Users that are interested in walk-jump are comparing it to the libraries listed below
- Protein Design with Guided Discrete Diffusion☆123Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆50Updated 9 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆71Updated last year
- ☆66Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆37Updated 9 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆53Updated 7 months ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆72Updated last year
- ☆57Updated 11 months ago
- ☆143Updated last year
- A list of manuscripts/tools using diffusion on biological enttieis☆96Updated last year
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆93Updated 7 months ago
- Aligning protein generative models with experimental fitness☆85Updated 4 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆37Updated 3 months ago
- Official implementation of "Learning the language of protein structures"☆20Updated 2 months ago
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆37Updated 7 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆56Updated 10 months ago
- A Modular Architecture for Deep Learning Systems☆40Updated 5 months ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- ☆81Updated 4 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆110Updated 2 months ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆44Updated 2 weeks ago
- Code for "Biological Sequence Design with GFlowNets", 2022☆73Updated last year
- A diffusion model for structure-based drug design with faster inference from learned representations of protein structure.☆28Updated last year
- Pose checks for 3D Structure-based Drug Design methods☆78Updated 4 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆47Updated last month
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆51Updated last year
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆35Updated last year
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆85Updated this week
- Code for the paper https://arxiv.org/abs/2402.04997☆70Updated last year
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆120Updated 2 years ago