Official repository for discrete Walk-Jump Sampling (dWJS)
☆57Dec 17, 2023Updated 2 years ago
Alternatives and similar repositories for walk-jump
Users that are interested in walk-jump are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein Design with Guided Discrete Diffusion☆143Feb 21, 2024Updated 2 years ago
- Aligning protein generative models with experimental fitness☆124Mar 12, 2026Updated 4 months ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆62Jun 3, 2024Updated 2 years ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆293Dec 10, 2024Updated last year
- Building more accurate protein structures from backbone torsion angles☆16Mar 21, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆142Aug 8, 2024Updated last year
- PeptoneBench: evaluating protein ensembles across the order-disorder continuum☆22Mar 24, 2026Updated 4 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆37May 28, 2024Updated 2 years ago
- Code for RL-DIF☆16Jun 24, 2025Updated last year
- Neural networks to model BCR affinity maturation☆15May 11, 2026Updated 2 months ago
- Code for "Biological Sequence Design with GFlowNets", 2022☆78Mar 17, 2023Updated 3 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆170Aug 24, 2023Updated 2 years ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆127May 27, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Code and model weights for PoET-2, a retrieval-augmented multimodel protein language model for protein sequence generation and representa…☆27Aug 20, 2025Updated 11 months ago
- ☆259Jul 31, 2024Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆144Nov 11, 2025Updated 8 months ago
- Derivative-Free Guidance in Diffusion Models with Soft Value-Based Decoding. For controlled generation in DNA, RNA, proteins, molecules (…☆39Jan 7, 2026Updated 6 months ago
- ☆217Sep 24, 2024Updated last year
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆129Jan 8, 2023Updated 3 years ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆165Jul 13, 2026Updated last week
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆12Dec 10, 2024Updated last year
- Inference code for Bio-Inspired Antibody Language Model☆26Aug 26, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12Aug 26, 2024Updated last year
- protein backbone refinement☆15Sep 12, 2024Updated last year
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- Template-based protein design with Raygun☆84Apr 12, 2026Updated 3 months ago
- A framework for training energy-based diffusion models for sampling and energy estimation.☆107May 10, 2026Updated 2 months ago
- Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)☆77May 19, 2024Updated 2 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- Public Release of ProGen3 family of Models☆114Jul 21, 2025Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆38Nov 7, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Code for "Discovering Non-monotonic Autoregressive Orderings with Variational Inference" (paper and code updated from ICLR 2021)☆12Mar 7, 2024Updated 2 years ago
- Machine learning-driven antibody design☆63Jul 5, 2023Updated 3 years ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆57Updated this week
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆106Jul 30, 2024Updated last year
- Neurally-derived Potts models for protein design, inspired by dTERMen☆14Aug 23, 2022Updated 3 years ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- Fast protein backbone generation with SE(3) flow matching.☆327Jul 19, 2024Updated 2 years ago