Official repository for discrete Walk-Jump Sampling (dWJS)
☆56Dec 17, 2023Updated 2 years ago
Alternatives and similar repositories for walk-jump
Users that are interested in walk-jump are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein Design with Guided Discrete Diffusion☆141Feb 21, 2024Updated 2 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆59Jun 3, 2024Updated last year
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated last week
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆278Dec 10, 2024Updated last year
- Building more accurate protein structures from backbone torsion angles☆15Mar 21, 2025Updated last year
- ☆136Aug 8, 2024Updated last year
- ☆31Nov 23, 2025Updated 4 months ago
- Public Release of ProGen3 family of Models☆104Jul 21, 2025Updated 8 months ago
- Protein Engineering via Exploration of an Energy Landscape☆129Mar 10, 2026Updated 2 weeks ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- Code for RL-DIF☆16Jun 24, 2025Updated 9 months ago
- Protein stability prediction using rewired protein generative models☆68Dec 25, 2025Updated 2 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆164Aug 24, 2023Updated 2 years ago
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated 3 weeks ago
- Code for "Biological Sequence Design with GFlowNets", 2022☆77Mar 17, 2023Updated 3 years ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆415Jul 3, 2023Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆137Nov 11, 2025Updated 4 months ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆148Mar 9, 2026Updated 2 weeks ago
- ☆256Jul 31, 2024Updated last year
- Derivative-Free Guidance in Diffusion Models with Soft Value-Based Decoding. For controlled generation in DNA, RNA, proteins, molecules (…☆37Jan 7, 2026Updated 2 months ago
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆127Jan 8, 2023Updated 3 years ago
- Inference code for Bio-Inspired Antibody Language Model☆26Aug 26, 2024Updated last year
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆12Dec 10, 2024Updated last year
- ☆214Sep 24, 2024Updated last year
- protein backbone refinement☆15Sep 12, 2024Updated last year
- ☆11Aug 26, 2024Updated last year
- Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)☆77May 19, 2024Updated last year
- Template-based protein design with Raygun☆77Feb 7, 2026Updated last month
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆60May 6, 2024Updated last year
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆36Dec 12, 2024Updated last year
- A standard library for biological research.☆32Sep 2, 2025Updated 6 months ago
- Flow-matching for coarse graining of miniproteins.☆20Nov 18, 2022Updated 3 years ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆37Nov 7, 2024Updated last year
- Code for "Discovering Non-monotonic Autoregressive Orderings with Variational Inference" (paper and code updated from ICLR 2021)☆12Mar 7, 2024Updated 2 years ago
- Machine learning-driven antibody design☆63Jul 5, 2023Updated 2 years ago
- Neurally-derived Potts models for protein design, inspired by dTERMen☆14Aug 23, 2022Updated 3 years ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆105Jul 30, 2024Updated last year
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆677Feb 27, 2026Updated 3 weeks ago
- Fast protein backbone generation with SE(3) flow matching.☆319Jul 19, 2024Updated last year