jbkinney / mavennLinks
MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect
☆28Updated 2 weeks ago
Alternatives and similar repositories for mavenn
Users that are interested in mavenn are comparing it to the libraries listed below
Sorting:
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- ☆40Updated 5 months ago
- Parse GFF3 into Pandas dataframes☆30Updated last year
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated last year
- Downloader for ENCODE☆32Updated 5 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆61Updated last week
- ☆38Updated 2 years ago
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆21Updated 8 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated last month
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated last month
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Updated 2 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆58Updated 10 months ago
- FREE Divergence Error-Correcting DNA Barcodes☆27Updated 10 months ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Updated 8 years ago
- Python package to plot sequence logos☆29Updated 2 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆46Updated 9 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Updated 3 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆35Updated 11 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 11 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- ☆20Updated 7 months ago
- Universal RObust Peak Annotator☆16Updated 2 years ago
- off-targeting assessment of Cas9 gRNAs☆15Updated 4 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated 2 years ago
- ☆21Updated 2 years ago
- Python port of the R Bioconductor `seqLogo` package☆35Updated last year