MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect
☆31May 11, 2026Updated 3 months ago
Alternatives and similar repositories for mavenn
Users that are interested in mavenn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Table of Multiplexed Assay of Variant Effect (MAVE) studies☆11Feb 21, 2023Updated 3 years ago
- ☆13Jan 23, 2025Updated last year
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆13May 9, 2026Updated 3 months ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Aug 3, 2026Updated last week
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Jul 27, 2020Updated 6 years ago
- We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. …☆20Jan 5, 2018Updated 8 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆22Jul 20, 2023Updated 3 years ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆36Jun 3, 2026Updated 2 months ago
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- ☆10Jun 27, 2021Updated 5 years ago
- ☆52Mar 22, 2026Updated 4 months ago
- Automatically identify non-interfering nucleotide linkers between a pegRNA and 3' motif☆10Aug 13, 2025Updated last year
- ☆18Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆26Jun 26, 2024Updated 2 years ago
- SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.☆16Jul 17, 2021Updated 5 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 5 years ago
- DeepSEA implements in PyTorch☆25Jun 5, 2019Updated 7 years ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆23Jun 8, 2026Updated 2 months ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 3 years ago
- Align sequences and then parse features.☆17Oct 24, 2025Updated 9 months ago
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆23Jul 22, 2026Updated 3 weeks ago
- R package with colour palettes derived from famous paintings by 17th century Dutch masers 🎨 🇳🇱!☆32Jul 30, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An automated model test system for synthetic biology models of gene expression and regulation.☆15Sep 17, 2020Updated 5 years ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆121Mar 17, 2022Updated 4 years ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- PyTorch implementation of Basenji2.☆22Apr 29, 2025Updated last year
- ☆19Apr 16, 2026Updated 4 months ago
- Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆17Sep 30, 2024Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Dec 14, 2021Updated 4 years ago
- Linear Mode Connectivity in Multitask and Continual Learning: https://arxiv.org/abs/2010.04495☆13Oct 12, 2020Updated 5 years ago
- systematic explanation of attribution-based mechanisms for regulatory genomics☆18May 29, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A rust port of pytorch dataloader☆31Dec 17, 2024Updated last year
- This repository hosts a minimal version of a Python API for BPNet.☆60Jul 19, 2026Updated 3 weeks ago
- ☆10Nov 30, 2024Updated last year
- development of network co-localization tool☆18Mar 2, 2026Updated 5 months ago
- Interpretable genotype-phenotype landscape modeling☆36Dec 3, 2023Updated 2 years ago
- An interactive graphical illustration of genetic associations and their biological context☆18Mar 14, 2024Updated 2 years ago
- "Global Importance Analysis: A Method to Quantify Importance of Genomic Features in Deep Neural Networks" by Koo et al.☆14Jun 22, 2022Updated 4 years ago