jbkinney / mavennLinks
MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect
☆28Updated 2 months ago
Alternatives and similar repositories for mavenn
Users that are interested in mavenn are comparing it to the libraries listed below
Sorting:
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- Downloader for ENCODE☆32Updated 5 years ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆45Updated 9 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated last month
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆34Updated 9 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆56Updated 8 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated 2 years ago
- ☆39Updated 3 months ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆60Updated last week
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- Human Primary T cells: A Practical Guide☆15Updated 7 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Annotating principal splice isoforms☆16Updated last year
- FREE Divergence Error-Correcting DNA Barcodes☆27Updated 8 months ago
- University of Cambridge PhD thesis☆16Updated 4 years ago
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆30Updated 4 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 10 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated this week
- Universal RObust Peak Annotator☆16Updated last year
- ☆20Updated 5 months ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆86Updated last month
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Updated 8 years ago
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Updated last year
- ☆82Updated last month
- Diverse sampling for single-cell datasets☆16Updated 5 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆24Updated last year
- Predict mutated T-cell epitopes from sequencing data☆30Updated 8 months ago