MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect
☆29Mar 12, 2026Updated 2 weeks ago
Alternatives and similar repositories for mavenn
Users that are interested in mavenn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Table of Multiplexed Assay of Variant Effect (MAVE) studies☆11Feb 21, 2023Updated 3 years ago
- ☆13Jan 23, 2025Updated last year
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12Aug 26, 2021Updated 4 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Oct 29, 2025Updated 4 months ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆19Mar 12, 2026Updated 2 weeks ago
- ☆10Aug 28, 2025Updated 6 months ago
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Jul 27, 2020Updated 5 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆22Jul 20, 2023Updated 2 years ago
- ☆48Updated this week
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. …☆20Jan 5, 2018Updated 8 years ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Jun 26, 2024Updated last year
- DeepSEA implements in PyTorch☆25Jun 5, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 4 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- R package with colour palettes derived from famous paintings by 17th century Dutch masers 🎨 🇳🇱!☆31Jul 30, 2019Updated 6 years ago
- Utilities for BE/Bi 103☆16Jul 11, 2025Updated 8 months ago
- PyTorch implementation of Basenji2.☆20Apr 29, 2025Updated 10 months ago
- Linear Mode Connectivity in Multitask and Continual Learning: https://arxiv.org/abs/2010.04495☆12Oct 12, 2020Updated 5 years ago
- An automated model test system for synthetic biology models of gene expression and regulation.☆15Sep 17, 2020Updated 5 years ago
- ☆25Aug 20, 2024Updated last year
- This repository hosts a minimal version of a Python API for BPNet.☆55Jan 24, 2026Updated 2 months ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Dec 14, 2021Updated 4 years ago
- A rust port of pytorch dataloader☆31Dec 17, 2024Updated last year
- Human Primary T cells: A Practical Guide☆15Sep 18, 2018Updated 7 years ago
- Interpretable genotype-phenotype landscape modeling☆36Dec 3, 2023Updated 2 years ago
- "Global Importance Analysis: A Method to Quantify Importance of Genomic Features in Deep Neural Networks" by Koo et al.☆13Jun 22, 2022Updated 3 years ago
- An interactive graphical illustration of genetic associations and their biological context☆17Mar 14, 2024Updated 2 years ago
- Downloader for ENCODE☆32Oct 5, 2020Updated 5 years ago
- Genomic signature interpretation tool for DNA double-strand break repair mechanism☆11Oct 8, 2025Updated 5 months ago
- ☆34Jan 27, 2025Updated last year
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆29Dec 22, 2022Updated 3 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 7 years ago
- Jupyter notebook for the application of convolutional neural nets to toy DNA sequence data☆15Aug 25, 2021Updated 4 years ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆120Mar 17, 2022Updated 4 years ago
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- Tool for estimating growth rates from microbial growth curves☆31Feb 4, 2026Updated last month
- ☆11Sep 4, 2025Updated 6 months ago