kyegomez / PairformerLinks
Implementation of the Pairformer model used in AlphaFold 3
☆14Updated last week
Alternatives and similar repositories for Pairformer
Users that are interested in Pairformer are comparing it to the libraries listed below
Sorting:
- A Modular Architecture for Deep Learning Systems☆45Updated 4 months ago
- Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆51Updated last year
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆118Updated this week
- Benchmark for LLM-based Agents in Computational Biology☆54Updated last week
- ☆12Updated 10 months ago
- ☆26Updated last year
- ☆15Updated 2 years ago
- Generative Pretrained Autoregressive Transformer Graph Neural Network applied to the Analysis and Discovery of Materials☆16Updated 2 years ago
- Automancer is a software application that enables researchers to design, automate, and manage their experiments.☆23Updated 2 years ago
- Your favourite classical machine learning algos on the GPU/TPU☆20Updated 9 months ago
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆56Updated 2 years ago
- ML-guided enzyme engineering☆68Updated last month
- Minimal AlphaFold☆54Updated last year
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆30Updated last year
- Framework enabling modular interchange of language agents, environments, and optimizers☆107Updated last week
- A Fast, Simplified Model for Molecular Generation with Improved Physical Quality☆20Updated last week
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆98Updated 2 years ago
- Pretraining Code for METAGENE-1☆68Updated 9 months ago
- A scientific reasoning model, dataset, and reward functions for chemistry.☆138Updated 3 months ago
- ProtMamba: a homology-aware but alignment-free protein state space model☆78Updated 4 months ago
- ☆25Updated 3 years ago
- Inpainting protein sequence and structure☆12Updated last year
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆19Updated last year
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆34Updated 10 months ago
- molecular plots in Jupyter, powererd by Blender Geometry Nodes☆55Updated last year
- Fine-tuning Galactica and Gemma to operate on SMILES. Integrates into a molecular optimization algorithm.☆34Updated 7 months ago
- Affinity Protein-Protein Transformers—State of the art protein-protein binding affinity in seconds!☆96Updated 7 months ago
- Large language models as universal biomedical simulators☆20Updated last year
- ☆10Updated last year
- The project proposal template for OpenBioML community projects.☆18Updated 2 years ago