kyegomez / PairformerLinks
Implementation of the Pairformer model used in AlphaFold 3
☆14Updated last month
Alternatives and similar repositories for Pairformer
Users that are interested in Pairformer are comparing it to the libraries listed below
Sorting:
- A Modular Architecture for Deep Learning Systems☆50Updated 7 months ago
- Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆52Updated 2 years ago
- ☆12Updated last year
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆122Updated this week
- Minimal AlphaFold☆56Updated last year
- Your favourite classical machine learning algos on the GPU/TPU☆20Updated 3 weeks ago
- Benchmark for LLM-based Agents in Computational Biology☆68Updated 3 months ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆98Updated 2 years ago
- [Bioinformatics 2025] Official implementation of the paper "ParaSurf: A Surface-Based Deep Learning Approach for Paratope-Antigen Interac…☆26Updated 3 weeks ago
- Generative Pretrained Autoregressive Transformer Graph Neural Network applied to the Analysis and Discovery of Materials☆16Updated 2 years ago
- Automancer is a software application that enables researchers to design, automate, and manage their experiments.☆25Updated 2 years ago
- Pretraining Code for METAGENE-1☆68Updated last year
- ML-guided enzyme engineering☆71Updated 2 months ago
- reasoning model trained using GRPO towards rosetta REF2015 for protein stability☆98Updated 2 months ago
- A scientific reasoning model, dataset, and reward functions for chemistry.☆150Updated 2 months ago
- Hackable AlphaFold 3 inference pipeline.☆34Updated 6 months ago
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆34Updated last year
- Making folding experiments more accessible .☆90Updated 5 months ago
- molecular plots in Jupyter, powererd by Blender Geometry Nodes☆55Updated last year
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆14Updated last year
- A Fast, Simplified Model for Molecular Generation with Improved Physical Quality☆24Updated 3 months ago
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆57Updated 3 years ago
- Framework enabling modular interchange of language agents, environments, and optimizers☆118Updated this week
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆33Updated 2 years ago
- ☆15Updated 2 years ago
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆19Updated last year
- Large language models as universal biomedical simulators☆20Updated last year
- Insights into the inner workings of transformer models for protein function prediction☆14Updated last year
- ☆27Updated last year
- ☆25Updated 3 years ago