Alternatives and similar repositories for Pairformer

Users that are interested in Pairformer are comparing it to the libraries listed below

• prescient-design / cortex
  A Modular Architecture for Deep Learning Systems
  ☆43Updated 3 months ago
• Future-House / BixBench
  Benchmark for LLM-based Agents in Computational Biology
  ☆50Updated 2 months ago
• lucidrains / neural-plexer-pytorch
  Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …
  ☆52Updated last year
• LiibanMo / scikit-jax
  Your favourite classical machine learning algos on the GPU/TPU
  ☆20Updated 7 months ago
• Vincentx15 / atom2D
  ☆12Updated 9 months ago
• etowahadams / interprot
  ☆116Updated 3 months ago
• Future-House / ldp
  Framework enabling modular interchange of language agents, environments, and optimizers
  ☆104Updated last week
• bioplanner / bioplanner
  Data from BioPlanner: Automatic Evaluation of LLMs on Protocol Planning in Biology paper
  ☆26Updated last year
• Rose-STL-Lab / Multi-Fidelity-Deep-Active-Learning
  ☆15Updated 2 years ago
• Future-House / ether0
  A scientific reasoning model, dataset, and reward functions for chemistry.
  ☆125Updated 2 months ago
• lightonai / RITA
  RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…
  ☆99Updated 2 years ago
• google-deepmind / nuclease_design
  ML-guided enzyme engineering
  ☆65Updated 2 weeks ago
• whitead / minimalaf
  Minimal AlphaFold
  ☆53Updated last year
• michaelhla / pro-1
  reasoning model trained using GRPO towards rosetta REF2015 for protein stability
  ☆89Updated last month
• metagene-ai / metagene-pretrain
  Pretraining Code for METAGENE-1
  ☆67Updated 7 months ago
• lamm-mit / MateriomicTransformer
  Generative Pretrained Autoregressive Transformer Graph Neural Network applied to the Analysis and Discovery of Materials
  ☆16Updated 2 years ago
• chaitjo / alphafold3
  Hackable AlphaFold 3 inference pipeline.
  ☆34Updated 2 months ago
• microsoft / protein-transfer
  ☆26Updated last year
• adaptyvbio / automancer
  Automancer is a software application that enables researchers to design, automate, and manage their experiments.
  ☆23Updated 2 years ago
• YerevaNN / ChemLactica
  Fine-tuning Galactica and Gemma to operate on SMILES. Integrates into a molecular optimization algorithm.
  ☆34Updated 6 months ago
• kolibril13 / ipyMolecularNodes
  molecular plots in Jupyter, powererd by Blender Geometry Nodes
  ☆55Updated last year
• Bitbol-Lab / ProtMamba-ssm
  ProtMamba: a homology-aware but alignment-free protein state space model
  ☆78Updated 2 months ago
• adaptyvbio / egfr_competition_1
  This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.
  ☆34Updated 8 months ago
• lamm-mit / AtomAgents
  ☆78Updated 3 months ago
• google-research / slip
  SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
  ☆19Updated last year
• lucidrains / equiformer-diffusion
  Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…
  ☆57Updated 2 years ago
• PDBeurope / protvista-pdb
  PDB ProtVista Viewer
  ☆11Updated last month
• daenuprobst / molzip
  The gzip classification method implemented for molecule classification.
  ☆55Updated 11 months ago
• MarkusWenzel / xai-proteins
  Insights into the inner workings of transformer models for protein function prediction
  ☆14Updated last year
• ShahidIqb / PROST
  A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. …
  ☆22Updated 2 years ago