Alternatives and similar repositories for Pairformer

Users that are interested in Pairformer are comparing it to the libraries listed below

• lucidrains / neural-plexer-pytorch
  Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …
  ☆52Updated last year
• prescient-design / cortex
  A Modular Architecture for Deep Learning Systems
  ☆43Updated 2 months ago
• etowahadams / interprot
  ☆115Updated 2 months ago
• Future-House / BixBench
  Benchmark for LLM-based Agents in Computational Biology
  ☆47Updated last month
• google-deepmind / nuclease_design
  ML-guided enzyme engineering
  ☆65Updated 2 months ago
• Vincentx15 / atom2D
  ☆12Updated 8 months ago
• whitead / minimalaf
  Minimal AlphaFold
  ☆53Updated 11 months ago
• metagene-ai / metagene-pretrain
  Pretraining Code for METAGENE-1
  ☆67Updated 7 months ago
• adaptyvbio / automancer
  Automancer is a software application that enables researchers to design, automate, and manage their experiments.
  ☆22Updated 2 years ago
• microsoft / protein-transfer
  ☆26Updated last year
• michaelhla / pro-1
  reasoning model trained using GRPO towards rosetta REF2015 for protein stability
  ☆86Updated 2 weeks ago
• Rose-STL-Lab / Multi-Fidelity-Deep-Active-Learning
  ☆15Updated 2 years ago
• songlab-cal / mogwai
  ☆25Updated 3 years ago
• google-research / slip
  SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
  ☆19Updated last year
• lightonai / RITA
  RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…
  ☆98Updated 2 years ago
• LiibanMo / scikit-jax
  Your favourite classical machine learning algos on the GPU/TPU
  ☆20Updated 7 months ago
• adaptyvbio / egfr_competition_1
  This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.
  ☆34Updated 7 months ago
• Bitbol-Lab / ProtMamba-ssm
  ProtMamba: a homology-aware but alignment-free protein state space model
  ☆78Updated 2 months ago
• PDBeurope / protvista-pdb
  PDB ProtVista Viewer
  ☆11Updated last month
• OpenBioML / project-proposal-template
  The project proposal template for OpenBioML community projects.
  ☆18Updated 2 years ago
• bioplanner / bioplanner
  Data from BioPlanner: Automatic Evaluation of LLMs on Protocol Planning in Biology paper
  ☆26Updated last year
• RomeroLab / RLXF
  Consolidated repository to perform RLXF
  ☆31Updated 2 months ago
• kolibril13 / ipyMolecularNodes
  molecular plots in Jupyter, powererd by Blender Geometry Nodes
  ☆55Updated last year
• hypnopump / rgn2-replica
  Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1
  ☆37Updated 3 years ago
• lamm-mit / MateriomicTransformer
  Generative Pretrained Autoregressive Transformer Graph Neural Network applied to the Analysis and Discovery of Materials
  ☆16Updated 2 years ago
• MarkusWenzel / xai-proteins
  Insights into the inner workings of transformer models for protein function prediction
  ☆14Updated last year
• ashvardanian / usearch-molecules
  Searching for structural similarities across billions of molecules in milliseconds
  ☆87Updated last year
• ShahidIqb / PROST
  A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. …
  ☆22Updated 2 years ago
• chaitjo / alphafold3
  Hackable AlphaFold 3 inference pipeline.
  ☆34Updated last month
• tyang816 / SES-Adapter
  🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…
  ☆24Updated 2 months ago