Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AISTATS, 2022).
☆38Feb 17, 2022Updated 4 years ago
Alternatives and similar repositories for variational-synthesis
Users that are interested in variational-synthesis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆16Jun 7, 2023Updated 3 years ago
- ☆12Aug 26, 2024Updated last year
- ☆19Jun 27, 2025Updated last year
- Code for "Biological Sequence Design with GFlowNets", 2022☆78Mar 17, 2023Updated 3 years ago
- Conditional Variational Autoencoder for the prediction of site-specific recombinases selective for a specified target site☆12Jun 23, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆114Sep 8, 2021Updated 4 years ago
- Nanopore UMI-linked consensus sequencing☆18Feb 11, 2021Updated 5 years ago
- Protein design and variant prediction using autoregressive generative models☆122Jan 23, 2024Updated 2 years ago
- DeepSP is an antibody-specific surrogate CNN model that can generate 30 spatial properties of an antibody solely based on their sequences…☆22Feb 23, 2026Updated 5 months ago
- Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape☆10Jun 11, 2022Updated 4 years ago
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- ☆74Feb 13, 2026Updated 5 months ago
- ☆25Nov 28, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- SMARTS: 'regular expressions' for chemical structures☆24Jun 21, 2018Updated 8 years ago
- Cross-protein transfer learning for variant effect prediction☆21Sep 13, 2023Updated 2 years ago
- PepSIRF: Peptide-based Serological Immune Response Framework☆11Jun 16, 2026Updated last month
- ☆52Sep 4, 2025Updated 10 months ago
- ☆12Nov 16, 2023Updated 2 years ago
- ☆22Jun 10, 2024Updated 2 years ago
- Evolutionary velocity with protein language models☆98Dec 9, 2025Updated 7 months ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Aug 27, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆134Nov 19, 2025Updated 8 months ago
- ☆40Sep 17, 2024Updated last year
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Apr 20, 2022Updated 4 years ago
- Integrating Deep Neural Networks and Symbolic Inference for Organic Reactivity Prediction☆13Jan 8, 2022Updated 4 years ago
- ☆11Jan 23, 2019Updated 7 years ago
- Benchmarking scripts for Gaia☆17Apr 10, 2025Updated last year
- ☆58May 26, 2026Updated last month
- ☆35Jun 29, 2024Updated 2 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Aug 10, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆15May 29, 2024Updated 2 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆104Apr 24, 2024Updated 2 years ago
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago
- QuickLook text preview and icon thumbnailing app extensions for macOS Catalina and beyond☆17May 31, 2025Updated last year
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆42Sep 16, 2025Updated 10 months ago
- Fully convolutional deep learning variant effect predictor architecture☆23Jan 3, 2024Updated 2 years ago