Alternatives and similar repositories for variational-synthesis:

Users that are interested in variational-synthesis are comparing it to the libraries listed below

• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆37Updated last year
• brianhie / uncertainty
  Learning with uncertainty for biological discovery and design
  ☆34Updated last year
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆49Updated last month
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆27Updated 2 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆57Updated 3 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆88Updated last year
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆24Updated last year
• aaronkollasch / seqdesign-pytorch
  Protein design and variant prediction using autoregressive generative models
  ☆23Updated 2 years ago
• rmrao / evo
  Mono-repo for protein utilities.
  ☆17Updated 3 years ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆95Updated last month
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆68Updated 10 months ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆71Updated 10 months ago
• ShintaroMinami / mican
  Non-sequential structural alignment program for protein structure
  ☆19Updated 4 months ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆48Updated 4 months ago
• allydunham / aa_subtypes
  Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
  ☆11Updated 2 years ago
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆43Updated 5 months ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆97Updated last year
• ronboger / conformal-protein-retrieval
  ☆14Updated last month
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆63Updated 7 years ago
• TattaBio / gLM2
  ☆58Updated 5 months ago
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 6 years ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆27Updated 3 months ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆37Updated last year
• EleutherAI / mp_nerf
  Massively-Parallel Natural Extension of Reference Frame
  ☆30Updated 2 years ago
• AbSciBio / igdesign
  ☆33Updated 2 months ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆83Updated 7 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆32Updated 2 years ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆34Updated 4 years ago
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆56Updated 3 years ago