Alternatives and similar repositories for variational-synthesis

Users that are interested in variational-synthesis are comparing it to the libraries listed below

• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• ronboger / conformal-protein-retrieval
  ☆16Updated 3 months ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆30Updated 9 months ago
• sokrypton / seqmodels
  ☆32Updated 3 months ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆117Updated last year
• Doudna-lab / GARNET_DL
  ☆36Updated 11 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• spetti / SMURF
  ☆134Updated 3 years ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆56Updated 11 months ago
• aqlaboratory / pnerf
  ☆36Updated 6 years ago
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆31Updated 2 years ago
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…
  ☆55Updated 8 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated 2 weeks ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆86Updated last year
• aaronkollasch / seqdesign-pytorch
  Protein design and variant prediction using autoregressive generative models
  ☆24Updated 2 years ago
• ElArkk / jax-unirep
  Reimplementation of the UniRep protein featurization model.
  ☆108Updated last year
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆26Updated last year
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆27Updated 5 years ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 6 years ago
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆71Updated 6 months ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆93Updated 2 months ago
• KrishnaswamyLab / ReLSO-Guided-Generative-Protein-Design-using-Regularized-Transformers
  a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)
  ☆90Updated 2 years ago
• EleutherAI / mp_nerf
  Massively-Parallel Natural Extension of Reference Frame
  ☆33Updated 2 years ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆56Updated last year
• zzhangzzhang / pLMs-interpretability
  ☆32Updated last year
• AbSciBio / igdesign
  ☆47Updated 11 months ago