soedinglab / CCMgenLinks
☆20Updated 3 years ago
Alternatives and similar repositories for CCMgen
Users that are interested in CCMgen are comparing it to the libraries listed below
Sorting:
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago
- Direct coupling analysis software for protein and RNA sequences☆50Updated last month
- ☆31Updated 4 years ago
- Mutation effects predicted from sequence co-variation☆66Updated 7 years ago
- Predict the structure of immune receptor proteins☆49Updated 7 months ago
- Fast and accurate protein structure prediction☆53Updated 5 months ago
- De novo protein structure prediction using iteratively predicted structural constraints☆58Updated 3 years ago
- Contact map alignment☆41Updated 4 years ago
- Non-sequential structural alignment program for protein structure☆19Updated 8 months ago
- Pseudo Likelihood Maximization for protein in Julia☆51Updated last month
- Evolutionary velocity with protein language models☆93Updated last year
- ☆30Updated last month
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 4 years ago
- ☆36Updated this week
- A domain parser for Alphafold models☆38Updated last year
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆26Updated 10 months ago
- We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…☆20Updated last year
- Python package to manage protein structures and their annotations☆43Updated last year
- ☆40Updated 9 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆88Updated last year
- Python framework for doing ancestral sequence reconstruction☆38Updated 11 months ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆37Updated 2 years ago
- ☆39Updated 7 years ago
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆35Updated 2 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- Contact map alignment☆16Updated 7 years ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆45Updated 2 weeks ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 6 months ago
- Library containing code to manipulate mmCIF and PDB files☆35Updated 2 weeks ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year