soedinglab / CCMgen
☆20Updated 3 years ago
Alternatives and similar repositories for CCMgen:
Users that are interested in CCMgen are comparing it to the libraries listed below
- Direct coupling analysis software for protein and RNA sequences☆50Updated last year
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 2 years ago
- Evolutionary velocity with protein language models☆90Updated last year
- Mutation effects predicted from sequence co-variation☆64Updated 7 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆34Updated 4 years ago
- Fast and accurate protein structure prediction☆52Updated 3 months ago
- Pseudo Likelihood Maximization for protein in Julia☆51Updated 3 months ago
- ☆18Updated 7 years ago
- Python package to manage protein structures and their annotations☆42Updated last year
- ☆31Updated 4 years ago
- ☆38Updated 7 months ago
- We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…☆20Updated last year
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆37Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated last month
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- Predict the structure of immune receptor proteins☆48Updated 5 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆83Updated last year
- AntiRef: reference clusters of human antibody sequences☆12Updated last year
- ☆38Updated 7 years ago
- Detection of remote homology by comparison of protein language model representations☆51Updated 4 months ago
- A domain parser for Alphafold models☆35Updated last year
- Python framework for doing ancestral sequence reconstruction☆38Updated 9 months ago
- PSIPRED Protein Secondary Structure Predictor☆54Updated 5 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 4 months ago
- A high performance drop-in replacement for Biotite's PDBFile.☆36Updated last month
- ☆19Updated 4 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆57Updated 3 years ago
- ☆28Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆19Updated last month