☆20Jul 16, 2021Updated 4 years ago
Alternatives and similar repositories for CCMgen
Users that are interested in CCMgen are comparing it to the libraries listed below
Sorting:
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆16Feb 1, 2021Updated 5 years ago
- ☆18Dec 22, 2017Updated 8 years ago
- Faster, more accurate and entirely open source method for predicting contacts in proteins☆12May 21, 2018Updated 7 years ago
- Bayesian multiple logistic regression for GWAS meta-analysis☆17Aug 20, 2025Updated 7 months ago
- Contact map alignment☆43Feb 3, 2021Updated 5 years ago
- ☆33Sep 19, 2025Updated 6 months ago
- kClust is a fast and sensitive clustering method for the clustering of protein sequences. It is able to cluster large protein databases d…☆18Feb 12, 2019Updated 7 years ago
- Deep learning prediction of protein residue-residue distances☆23Jun 28, 2022Updated 3 years ago
- Contact map alignment☆16May 10, 2018Updated 7 years ago
- ☆11Apr 25, 2021Updated 4 years ago
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆114Nov 8, 2023Updated 2 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆36Aug 23, 2020Updated 5 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆59Oct 17, 2022Updated 3 years ago
- Tejaas - a tool for discovering trans-eQTLs☆11Oct 14, 2022Updated 3 years ago
- Mutation effects predicted from sequence co-variation☆74Sep 3, 2017Updated 8 years ago
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- USUM: Plotting sequence similarity using USEARCH & UMAP & t-SNE☆14Feb 26, 2021Updated 5 years ago
- OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling☆21May 4, 2020Updated 5 years ago
- Interpretable genotype-phenotype landscape modeling☆36Dec 3, 2023Updated 2 years ago
- Autoregressive networks for protein☆38Feb 27, 2025Updated last year
- Metagenomics Pipeline Repository for January, 2015 NCBI/ADDS Hackathon at NIH☆10Oct 31, 2016Updated 9 years ago
- ☆26May 9, 2022Updated 3 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 6 years ago
- Deciphering protein evolution and fitness landscapes with latent space models☆37Nov 2, 2021Updated 4 years ago
- ☆10Aug 29, 2012Updated 13 years ago
- Implementation of "Generative Modeling for Protein Structures" by Namrata Anand and Po-Ssu Huang☆19Sep 8, 2021Updated 4 years ago
- Generate JSON diffs between pixi lockfiles☆10Mar 11, 2026Updated last week
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 6 years ago
- interactive Multi Objective K-mer Analysis☆24Mar 5, 2023Updated 3 years ago
- Pseudo Likelihood Maximization for protein in Julia☆52May 15, 2025Updated 10 months ago
- ☆30May 15, 2025Updated 10 months ago
- ☆76Oct 27, 2021Updated 4 years ago
- Run Jupyter on Orchestra 2☆12Jan 18, 2023Updated 3 years ago
- Biobb_amber is a BioBB category for AMBER MD package.☆14Mar 5, 2026Updated 2 weeks ago
- Sequence analysis library used by Eddy/Rivas lab code☆52Feb 16, 2026Updated last month
- A generative latent variable model for biological sequence families.☆249Mar 15, 2022Updated 4 years ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆19May 6, 2019Updated 6 years ago
- ☆11May 4, 2021Updated 4 years ago