Alternatives and similar repositories for CCMgen

Users that are interested in CCMgen are comparing it to the libraries listed below

• pagnani / PlmDCA.jl
  Pseudo Likelihood Maximization for protein in Julia
  ☆51Updated 6 months ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆58Updated 4 months ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆70Updated 8 years ago
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆60Updated 3 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆60Updated 7 months ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆113Updated 2 years ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆59Updated 2 years ago
• soedinglab / uniclust-pipeline
  ☆40Updated 7 years ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆53Updated 4 months ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆115Updated last month
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated 2 years ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆56Updated 10 months ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆36Updated 4 years ago
• matteofigliuzzi / bmDCA
  ☆18Updated 7 years ago
• ElArkk / jax-unirep
  Reimplementation of the UniRep protein featurization model.
  ☆108Updated last year
• debbiemarkslab / EVzoom
  Visually explore covariation in protein families
  ☆40Updated 5 years ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆44Updated last year
• brineylab / antiref
  AntiRef: reference clusters of human antibody sequences
  ☆12Updated last year
• sokrypton / map_align
  Contact map alignment
  ☆41Updated 4 years ago
• sokrypton / seqmodels
  ☆32Updated 2 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 4 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• debbiemarkslab / variational-synthesis
  Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…
  ☆35Updated 3 years ago
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated 2 years ago
• largelymfs / deepcontact
  DeepContact Software
  ☆26Updated 7 years ago
• tristanic / pae_to_domains
  Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
  ☆35Updated 3 years ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆61Updated 8 months ago