debbiemarkslab / BEARLinks
This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"
☆13Updated 2 years ago
Alternatives and similar repositories for BEAR
Users that are interested in BEAR are comparing it to the libraries listed below
Sorting:
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆35Updated 3 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Updated 4 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- A package for making MuE observation models in Edward2.☆13Updated 4 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆88Updated 3 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- ☆134Updated 3 years ago
- ☆36Updated 11 months ago
- Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences☆31Updated 4 years ago
- Diverse Genomic Embedding Benchmark☆50Updated 3 months ago
- Cross-protein transfer learning for variant effect prediction☆20Updated 2 years ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆17Updated 3 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆54Updated 6 years ago
- ☆15Updated 6 months ago
- ☆32Updated 3 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆32Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- Ancestral protein sequence reconstruction using a tree-structured Ornstein-Uhlenbeck variational autoencoder☆17Updated last month
- Interpretable genotype-phenotype landscape modeling☆36Updated 2 years ago
- Evolutionary velocity with protein language models☆94Updated 2 weeks ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆52Updated 3 months ago
- ☆75Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- ☆18Updated 10 months ago
- ☆11Updated 4 years ago
- ☆16Updated 3 months ago
- Species-aware DNA language modeling☆18Updated 2 years ago