debbiemarkslab / BEAR
This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"
☆12Updated last year
Related projects ⓘ
Alternatives and complementary repositories for BEAR
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆17Updated 3 years ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆55Updated last year
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆81Updated 2 years ago
- Interpretable genotype-phenotype landscape modeling☆35Updated 11 months ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆28Updated 2 years ago
- A package for making MuE observation models in Edward2.☆13Updated 3 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 5 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆60Updated 2 years ago
- Unsupervised neural network for learning embeddings of GO terms.☆16Updated 2 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆34Updated 2 years ago
- ☆130Updated 2 years ago
- Sequence-to-function deep learning frameworks for engineered riboregulators☆14Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆28Updated 3 weeks ago
- Categorical Variational Autoencoders☆23Updated 2 years ago
- ☆24Updated 4 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Updated last year
- Evolutionary velocity with protein language models☆83Updated last year
- Spectral Framework For AI Model Evaluation☆24Updated last month
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆44Updated 5 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆43Updated 5 years ago
- ☆55Updated last year
- ☆30Updated 4 years ago
- ☆27Updated 2 weeks ago
- Diverse Genomic Embedding Benchmark☆37Updated last month
- Repository for Protein-Vec, a protein embedding mixture of experts model☆34Updated 9 months ago
- Data Files for "Deep diversification of an AAV capsid protein by machine learning"☆14Updated 3 years ago
- Cross-protein transfer learning for variant effect prediction☆17Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆42Updated 3 months ago
- surrogate quantitative interpretability for deepnets☆17Updated 4 months ago
- PDB ProtVista Viewer☆10Updated last month