cmzmasek / foresterLinks
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
☆36Updated 2 weeks ago
Alternatives and similar repositories for forester
Users that are interested in forester are comparing it to the libraries listed below
Sorting:
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆66Updated last year
- Protein Alignment and Detection Interface☆61Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆71Updated last year
- Bioinformatics Pipeline and Visualization resources☆56Updated 9 months ago
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆29Updated last month
- A toolbox for comparative genomics.☆104Updated 4 years ago
- Standard database for the TBProfiler tool☆29Updated last week
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆30Updated last month
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 2 years ago
- Scripts and libraries for Environmental Genomics☆38Updated 4 months ago
- Automatically exported from code.google.com/p/jmodeltest2☆80Updated 3 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- MFannot is a program for the annotation of mitochondrial and plastid genomes☆22Updated last year
- Python tool to reduce size and redundancy of phylogenetic datasets☆42Updated 2 years ago
- A toolbox for improving metagenome-assembled genomes.☆63Updated 4 years ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆42Updated last year
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆57Updated 2 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 4 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- MEGAN Community Edition☆71Updated 11 months ago
- Implementation of the TreeShrink problem☆45Updated 9 months ago
- Collection of scripts for bacterial genomics☆45Updated 5 years ago
- IS mapping software☆54Updated 3 years ago
- Automatic Assembly For The Fungi☆21Updated 5 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago