forester is a collection of open-source libraries and tools for genomics and evolutionary biology research. It includes the tree viewer Archaeopteryx.
☆41Oct 3, 2026Updated 2 weeks ago
Alternatives and similar repositories for forester
Users that are interested in forester are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.☆43Updated this week
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- que paquete☆10Jul 17, 2024Updated 2 years ago
- ☆14Mar 28, 2018Updated 8 years ago
- Repository of our application for human-augmented binning☆27Apr 26, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Dendroscope program for analyzing and visualizing rooted phylogenetic trees and networks☆49Apr 28, 2025Updated last year
- Posterior summarisation in Bayesian phylogenetics☆77Sep 27, 2025Updated last year
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Dec 18, 2019Updated 6 years ago
- The Dinucleotide Quantification Python Package☆11Mar 12, 2022Updated 4 years ago
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆11Aug 27, 2026Updated last month
- coevol -- Correlated evolution of substitution rates and quantitative traits☆13Oct 18, 2024Updated last year
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆15Dec 11, 2024Updated last year
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Updated this week
- Ancestral Sequence Reconstruction in Python☆15May 9, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆23Oct 27, 2020Updated 5 years ago
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22May 27, 2026Updated 4 months ago
- DFAST Quality Control: Taxonomy and completeness check☆19Jun 17, 2026Updated 4 months ago
- KBase distribution module for RASTtk.☆15Sep 14, 2020Updated 6 years ago
- ☆29Oct 9, 2026Updated last week
- A new graphical interface for RAxML☆23Sep 15, 2026Updated last month
- Source code for TreeBASE web application and database☆17May 18, 2026Updated 4 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated 2 years ago
- interactive phylogenetic tree viewer☆11Jun 26, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 3 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Sep 15, 2026Updated last month
- R Interfaces to Phylogenetic Software☆12Jun 25, 2026Updated 3 months ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆25Mar 20, 2026Updated 6 months ago
- R package for microbial pangenomics☆25Apr 12, 2022Updated 4 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆29Aug 3, 2026Updated 2 months ago
- long-read depth breaking☆12Apr 19, 2018Updated 8 years ago
- a toolbox for utilize organelle genomic data☆25May 18, 2026Updated 4 months ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- GTDB => NCBI☆16Nov 14, 2024Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- [ACL 2024] FactPICO☆12Feb 26, 2024Updated 2 years ago
- Docker containers that demonstrate a proof of concept bwa alignment workflow☆14Jan 13, 2015Updated 11 years ago
- Use Python to automatically set fan speed for Lenovo HR650X Server☆13Dec 7, 2023Updated 2 years ago
- R package for ecological niche analysis (subniche on CRAN). Refines OMI analysis for realized niche decomposition using marine and enviro…☆11Apr 1, 2026Updated 6 months ago
- Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape☆10Jun 11, 2022Updated 4 years ago