terrimporter / CO1ClassifierLinks
This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.
☆32Updated 2 years ago
Alternatives and similar repositories for CO1Classifier
Users that are interested in CO1Classifier are comparing it to the libraries listed below
Sorting:
- Using ggtree to build phylogenetic trees☆47Updated 8 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- GraftM - Rapid community profiles from metagenomes☆45Updated last year
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆16Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- BEAV: Bacterial Element Annotation reVamped☆66Updated 8 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆31Updated last year
- Phylogenetic penalized likelihood☆49Updated 3 weeks ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆62Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Updated last year
- EukRef curation pipeline☆13Updated 4 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- ☆14Updated 7 years ago
- ☆76Updated last year
- Sydney Phylogenetics Workshop☆63Updated last week
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆10Updated 3 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Assign taxonomy with blast, can be used for qiime☆23Updated 3 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- functions for analyzing phyloseq data☆28Updated 5 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 4 months ago
- ☆56Updated last week
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆81Updated last month