DominikBuchner / BOLDiggerLinks
A python package to query different databases of boldsystems.org
☆30Updated 7 months ago
Alternatives and similar repositories for BOLDigger
Users that are interested in BOLDigger are comparing it to the libraries listed below
Sorting:
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated last year
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆15Updated 4 months ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated 2 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- [deprecated] Please use ampvis2☆8Updated 7 years ago
- JAMP - Just Another Metabarcoding Pipeline☆36Updated 3 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆81Updated 2 weeks ago
- ☆12Updated last year
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆22Updated 2 years ago
- ☆29Updated last year
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 3 months ago
- A web app for environmental DNA metabarcoding analysis☆10Updated 3 years ago
- Various functions for analysis of microbial community data☆45Updated 2 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆31Updated 11 months ago
- A generalised, dynamic DNA reference library for metabarcoding of fishes☆16Updated 10 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- creating reference databases for amplicon sequencing☆39Updated last week
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated 2 years ago
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆31Updated 8 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆16Updated last year
- Look Up Guild Information for Fungi in R☆21Updated 3 months ago
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆48Updated 10 months ago
- R mased batch sequence downloader, with primer development and in silico evaluation capabilities☆34Updated 7 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆32Updated this week
- Using ggtree to build phylogenetic trees☆47Updated 7 months ago
- Automatically exported from code.google.com/p/jmodeltest2☆80Updated 3 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆88Updated last month
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆19Updated 3 months ago