DominikBuchner / BOLDiggerLinks
A python package to query different databases of boldsystems.org
☆32Updated last year
Alternatives and similar repositories for BOLDigger
Users that are interested in BOLDigger are comparing it to the libraries listed below
Sorting:
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated 2 months ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆17Updated 3 months ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆83Updated 3 weeks ago
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆49Updated last month
- FUNGuild: parsing OTUs into functional guilds☆123Updated last year
- JAMP - Just Another Metabarcoding Pipeline☆37Updated 3 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆35Updated 2 months ago
- ☆14Updated 11 years ago
- Various functions for analysis of microbial community data☆47Updated last month
- ☆50Updated 4 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- A generalised, dynamic DNA reference library for metabarcoding of fishes☆16Updated last year
- Using ggtree to build phylogenetic trees☆50Updated last year
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 3 weeks ago
- ☆12Updated last year
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆91Updated last year
- Automatically exported from code.google.com/p/jmodeltest2☆82Updated 4 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆92Updated 3 months ago
- MetaCompare☆19Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆165Updated 2 months ago
- Repository for all Ocean Sampling Day related source code with information on how-to acquire OSD data☆14Updated last year
- 🍄 Qiime2 ITS classifiers for the UNITE database☆46Updated 3 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆32Updated last year
- Dissimilarity Overlap Curve analysis☆11Updated 3 years ago
- Utilities for community ecology analysis☆19Updated 5 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆18Updated 2 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- ☆30Updated last year