R package supporting interactive data access on BOLD
☆27Aug 20, 2026Updated 2 months ago
Alternatives and similar repositories for BOLDconnectR
Users that are interested in BOLDconnectR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- Interface to the Bold Systems barcode webservice☆21Jan 6, 2025Updated last year
- Distance denoise by Entropy☆16Oct 17, 2025Updated last year
- ☆22Aug 18, 2026Updated 2 months ago
- The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequenci…☆12Apr 5, 2026Updated 6 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A reference database manager for R☆13Feb 27, 2026Updated 8 months ago
- An even better Python program to query .fasta files against the COI database of www.boldsystems.org☆11Oct 28, 2024Updated 2 years ago
- R mased batch sequence downloader, with primer development and in silico evaluation capabilities☆36Oct 30, 2024Updated 2 years ago
- ☆36May 29, 2024Updated 2 years ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33May 24, 2023Updated 3 years ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆20May 26, 2025Updated last year
- World Register of Marine Species R client☆28Jan 15, 2024Updated 2 years ago
- creating reference databases for amplicon sequencing☆54Jan 13, 2026Updated 9 months ago
- A python package to query different databases of boldsystems.org☆33Oct 28, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- C++ implementation of lulu, a R package for post-clustering curation of metabarcoding data☆11Aug 1, 2026Updated 2 months ago
- ☆20Aug 19, 2026Updated 2 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆76Dec 21, 2023Updated 2 years ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 9 months ago
- The Ribosomal Operon Database (ROD)☆13Apr 2, 2025Updated last year
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- This is a read-only mirror of the CRAN R package repository. ape — Analyses of Phylogenetics and Evolution. Homepage: https://github.co…☆12Dec 16, 2024Updated last year
- Bug flow is a community resource for entomological collection digitization workflows and modules.☆25Jul 19, 2024Updated 2 years ago
- An open-source data management system for tracking environmental DNA samples and metadata☆16Aug 8, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Maximum likelihood demultiplexing☆54Aug 6, 2026Updated 2 months ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Oct 22, 2026Updated last week
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Sep 5, 2025Updated last year
- Easily download genomes and build BLAST/Bowtie indexes in Python☆24Sep 30, 2022Updated 4 years ago
- MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz files to taxonomic a…☆23Feb 23, 2026Updated 8 months ago
- Data Processing and Visualization for Metagenomics☆17Oct 31, 2024Updated 2 years ago
- This repository contains the latest version of the HomeRange data and R package.☆12Apr 17, 2025Updated last year
- Simple and crude scripts that I've written for my own work that may be of help to others with similar tasks☆12Jun 16, 2020Updated 6 years ago
- R tools for reconstructing metabolisms.☆18May 13, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Design primers for species-specific qPCR☆10Jun 1, 2017Updated 9 years ago
- Biology 202 Course Website☆18Oct 1, 2020Updated 6 years ago
- Scripts and files for the annual Short Read Analysis Workshop☆19Aug 19, 2026Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆38Jun 4, 2026Updated 4 months ago
- ☆14Jul 12, 2022Updated 4 years ago
- Basic Sequence Taxonomy Annotator☆46May 14, 2024Updated 2 years ago
- Look Up Guild Information for Fungi in R☆26Aug 14, 2026Updated 2 months ago