yywyaoyaowu / SolEvo_PotatoDeleLinks
Use hifi to assembly the Sol genome, and dissecting Sol evo
☆19Updated 2 years ago
Alternatives and similar repositories for SolEvo_PotatoDele
Users that are interested in SolEvo_PotatoDele are comparing it to the libraries listed below
Sorting:
- scripts used in Rice Pangenome Projects (Evolution).☆13Updated 2 years ago
- Plant genome assembly and annotation pipeline using snakemake☆50Updated 7 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- a Semi-automated pipeline for assembling T2T genome☆24Updated last month
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆50Updated 3 months ago
- ☆41Updated 4 months ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 9 months ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- ☆45Updated 3 years ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆43Updated 2 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated this week
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆39Updated last year
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆29Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆35Updated last year
- ☆42Updated last year
- scripts☆20Updated 7 years ago
- The IntroBlocker ancestry inference algorithm☆17Updated 2 years ago
- Genome Annotation Pipeline☆42Updated last year
- An efficient assembly tool for plant mitochondrial genome☆65Updated last year
- This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…☆23Updated 7 months ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆35Updated last week
- ☆36Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago